Click here to switch to the map view.

The map label for this gene is yeaM [H]

Identifier: 238894820

GI number: 238894820

Start: 2701449

End: 2702216

Strand: Reverse

Name: yeaM [H]

Synonym: KP1_2834

Alternate gene names: 238894820

Gene position: 2702216-2701449 (Counterclockwise)

Preceding gene: 238894822

Following gene: 238894819

Centisome position: 51.49

GC content: 57.55

Gene sequence:

>768_bases
GTGCGCAACGTAAAAATTGACGAGTTCGATCGACTCGATCGTGATGTGGTGGCGTTAGGTAATGACTATGCGCAGGGATT
TATCCTGCCCCCGCACCAGCATCGTCGCGCACAGCTACTGTATGGCGCGACCGGACTGATGTATGTCACTACGCAAGACG
GAGAATGGGTGGTTCCTCCGCAACACGCTGTCTGGATCCCCCCTGAAACCGTGCATGCCGTCAGATTTGCAGGGGTGACC
ACGCGTAGCTTGTATATTGAGCCAGATTGTGTGGCCGCTTTCATTAAACACCGTCGTTGCGAAGTGATCAGCGTCTCGCC
GCTGTTGCGCCAGCTACTGCTTGAGGCTGTGGATTTACCACCGTTGTACGACAGCCCACGCGATCGCACGCTGATACAGT
TGATGTTGCTGGAACTGGCCGCCATGCCGGTCCGCGAATTTGACATTCCGTTGCCGCAGCATCCGGCGCTGCTGGCGCTT
TGTCAGGCTTTTTTGCTTAACCCCTCTATCCATGATCCTGCGGCGCGCTGGGCCAGGGCGCTGTTTATGAGTCCTAGTAC
CTTTCGCCGCCATTTCCTGAAGCAGCTGGGCCTGTCGTTTTCCGCCTGGCGACAGCGAGCCTGCGTGGTGAGCGCCCTGG
CATGGTTGATAGCAGGCAAACCGGTGAACGAAGTGGCATTATCCCTTGGATACGACAATGCGTCCTCTTTCGCCACCATG
TTCCGCCGCGTGACCGGGCAGCCGCCGTCGTTTTATCACCCAGCCTGA

Upstream 100 bases:

>100_bases
CCCGACCTGAAAATGAGCGAGCAGCTTATACCGGTCGCGTACTGCTTCCCATTTGCGTAGCGCTCAATTACCTTTGTAAA
TCGGTCAGAGGGAGGCAGGT

Downstream 100 bases:

>100_bases
GGCGTCGGAGAAGGGGACTCCCGCAGCATGTGTCGGAAAAGAATGTCGCTTTTATGGCGTTGCTATGCGTTTACGCGGTC
ATAAGACAGATAATCCAGGA

Product: putative AraC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MRNVKIDEFDRLDRDVVALGNDYAQGFILPPHQHRRAQLLYGATGLMYVTTQDGEWVVPPQHAVWIPPETVHAVRFAGVT
TRSLYIEPDCVAAFIKHRRCEVISVSPLLRQLLLEAVDLPPLYDSPRDRTLIQLMLLELAAMPVREFDIPLPQHPALLAL
CQAFLLNPSIHDPAARWARALFMSPSTFRRHFLKQLGLSFSAWRQRACVVSALAWLIAGKPVNEVALSLGYDNASSFATM
FRRVTGQPPSFYHPA

Sequences:

>Translated_255_residues
MRNVKIDEFDRLDRDVVALGNDYAQGFILPPHQHRRAQLLYGATGLMYVTTQDGEWVVPPQHAVWIPPETVHAVRFAGVT
TRSLYIEPDCVAAFIKHRRCEVISVSPLLRQLLLEAVDLPPLYDSPRDRTLIQLMLLELAAMPVREFDIPLPQHPALLAL
CQAFLLNPSIHDPAARWARALFMSPSTFRRHFLKQLGLSFSAWRQRACVVSALAWLIAGKPVNEVALSLGYDNASSFATM
FRRVTGQPPSFYHPA
>Mature_255_residues
MRNVKIDEFDRLDRDVVALGNDYAQGFILPPHQHRRAQLLYGATGLMYVTTQDGEWVVPPQHAVWIPPETVHAVRFAGVT
TRSLYIEPDCVAAFIKHRRCEVISVSPLLRQLLLEAVDLPPLYDSPRDRTLIQLMLLELAAMPVREFDIPLPQHPALLAL
CQAFLLNPSIHDPAARWARALFMSPSTFRRHFLKQLGLSFSAWRQRACVVSALAWLIAGKPVNEVALSLGYDNASSFATM
FRRVTGQPPSFYHPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=225, Percent_Identity=34.2222222222222, Blast_Score=126, Evalue=1e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28774; Mature: 28774

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNVKIDEFDRLDRDVVALGNDYAQGFILPPHQHRRAQLLYGATGLMYVTTQDGEWVVPP
CCCCCCCHHHHCCHHHHHHCCHHHCCEECCCCCCCHHHEEECCCEEEEEEECCCCEEECC
QHAVWIPPETVHAVRFAGVTTRSLYIEPDCVAAFIKHRRCEVISVSPLLRQLLLEAVDLP
CCEEECCCHHHHHHHCCCCEEEEEEECHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCC
PLYDSPRDRTLIQLMLLELAAMPVREFDIPLPQHPALLALCQAFLLNPSIHDPAARWARA
CCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
LFMSPSTFRRHFLKQLGLSFSAWRQRACVVSALAWLIAGKPVNEVALSLGYDNASSFATM
HHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHH
FRRVTGQPPSFYHPA
HHHHCCCCCCCCCCC
>Mature Secondary Structure
MRNVKIDEFDRLDRDVVALGNDYAQGFILPPHQHRRAQLLYGATGLMYVTTQDGEWVVPP
CCCCCCCHHHHCCHHHHHHCCHHHCCEECCCCCCCHHHEEECCCEEEEEEECCCCEEECC
QHAVWIPPETVHAVRFAGVTTRSLYIEPDCVAAFIKHRRCEVISVSPLLRQLLLEAVDLP
CCEEECCCHHHHHHHCCCCEEEEEEECHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCC
PLYDSPRDRTLIQLMLLELAAMPVREFDIPLPQHPALLALCQAFLLNPSIHDPAARWARA
CCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
LFMSPSTFRRHFLKQLGLSFSAWRQRACVVSALAWLIAGKPVNEVALSLGYDNASSFATM
HHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHH
FRRVTGQPPSFYHPA
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]