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The map label for this gene is ycdC [C]

Identifier: 238894788

GI number: 238894788

Start: 2669277

End: 2669924

Strand: Direct

Name: ycdC [C]

Synonym: KP1_2798

Alternate gene names: 238894788

Gene position: 2669277-2669924 (Clockwise)

Preceding gene: 238894786

Following gene: 238894790

Centisome position: 50.86

GC content: 57.25

Gene sequence:

>648_bases
ATGCACCGCTGTCGCAGGACGGCCGTGTCACCGGCAATCGTGACAGCGAACCATTCGACAGGAAAACGCATGAAGCCAAA
ACAAGCGGACATTCTCCGCCACGCCAGCACGCTGTTTAATCGCGAAGGATATCAGTCGCCCAGCATCGAGCGGATTGCTG
AACATGCTGGCATCTCCAAAATGACCTTCTACCGCTATTACGCCGATAAAGAGGCGCTCATTCTGGCTATCCTCAAGCAG
AAAGAGAGCGAATTTATGCAGGATTTGGCGCAGATCACCGCGGATAAAGCCAGCGCGCGGGAAAAGCTGTTCGCCGTGTT
CGACTACTACCATCGCTGGTTTACCTGCGAAACGTTCCACGGCTGCATGTTTACCCGCGCGCTGTTTGAATATGGCGCGT
CATCGCCGGCGATCCGGGAGCAATGCTCCCGATTTAAGTCGCTCCTCTGGCAGTTCTTCCGCGATATCCTCCTGCAGGTG
TTAAAACCGGAACCTGCCGAGCGGGTGGCCATGATGATGGTGATGCTCATTGATGGCGCCATCGCCGCCCAGCAGGCCGA
GTCCGCCGAATGCCGGGAGATCCCGCCAGGGATGACCGCCTGGAGCGCGGCCAAAGCGCTTATTTACTCAGAAGGCGGTA
CGCTGTGA

Upstream 100 bases:

>100_bases
TTGTGTATGTCTACGCAATCTTGTTTTTATTGAGGGAACCGACTCCGCATAAACCGCGGCTGATTTACTTTTTGCCCGTC
TGGCGGCAAGATCCGGCATA

Downstream 100 bases:

>100_bases
GATGATAAGCTGCCGCCCAGCGACTGCAGGGCCGCCAGCAGACAATCATAGTAATCGTTGCAGGTTTGCAGACGCAGCGC
GGCGCCAAAGAAGACCTCCT

Product: putative TetR/AcrR-family trancriptional regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator Protein; TetR Family Regulatory Protein; Transcriptional Regulator TetR Family Protein; Regulatory Protein; Regulatory Protein TetR; Transcription Regulator TetR; TetR-Family Protein Transcriptional Regulator; TetR/AcrR-Family Trancriptional Regulatory Protein

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MHRCRRTAVSPAIVTANHSTGKRMKPKQADILRHASTLFNREGYQSPSIERIAEHAGISKMTFYRYYADKEALILAILKQ
KESEFMQDLAQITADKASAREKLFAVFDYYHRWFTCETFHGCMFTRALFEYGASSPAIREQCSRFKSLLWQFFRDILLQV
LKPEPAERVAMMMVMLIDGAIAAQQAESAECREIPPGMTAWSAAKALIYSEGGTL

Sequences:

>Translated_215_residues
MHRCRRTAVSPAIVTANHSTGKRMKPKQADILRHASTLFNREGYQSPSIERIAEHAGISKMTFYRYYADKEALILAILKQ
KESEFMQDLAQITADKASAREKLFAVFDYYHRWFTCETFHGCMFTRALFEYGASSPAIREQCSRFKSLLWQFFRDILLQV
LKPEPAERVAMMMVMLIDGAIAAQQAESAECREIPPGMTAWSAAKALIYSEGGTL
>Mature_215_residues
MHRCRRTAVSPAIVTANHSTGKRMKPKQADILRHASTLFNREGYQSPSIERIAEHAGISKMTFYRYYADKEALILAILKQ
KESEFMQDLAQITADKASAREKLFAVFDYYHRWFTCETFHGCMFTRALFEYGASSPAIREQCSRFKSLLWQFFRDILLQV
LKPEPAERVAMMMVMLIDGAIAAQQAESAECREIPPGMTAWSAAKALIYSEGGTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24477; Mature: 24477

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRCRRTAVSPAIVTANHSTGKRMKPKQADILRHASTLFNREGYQSPSIERIAEHAGISK
CCHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHH
MTFYRYYADKEALILAILKQKESEFMQDLAQITADKASAREKLFAVFDYYHRWFTCETFH
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GCMFTRALFEYGASSPAIREQCSRFKSLLWQFFRDILLQVLKPEPAERVAMMMVMLIDGA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IAAQQAESAECREIPPGMTAWSAAKALIYSEGGTL
HHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MHRCRRTAVSPAIVTANHSTGKRMKPKQADILRHASTLFNREGYQSPSIERIAEHAGISK
CCHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHH
MTFYRYYADKEALILAILKQKESEFMQDLAQITADKASAREKLFAVFDYYHRWFTCETFH
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GCMFTRALFEYGASSPAIREQCSRFKSLLWQFFRDILLQVLKPEPAERVAMMMVMLIDGA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IAAQQAESAECREIPPGMTAWSAAKALIYSEGGTL
HHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA