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The map label for this gene is cdaR [H]

Identifier: 238894733

GI number: 238894733

Start: 2614385

End: 2615542

Strand: Reverse

Name: cdaR [H]

Synonym: KP1_2740

Alternate gene names: 238894733

Gene position: 2615542-2614385 (Counterclockwise)

Preceding gene: 238894734

Following gene: 238894730

Centisome position: 49.83

GC content: 52.85

Gene sequence:

>1158_bases
ATGATTATTACAACAGCGCTGGCTAATGAAATTGTCGCCCGGGCAATGGCGATAATTCATCATAACGTGAATGTGATTGA
CCATCATGGACAGATCATTGCCTCAGGTGAACGGCATCGTATCGGCGAACAGCATGAAGTCGCCCAAGAGGTAATACGCA
CCGGGAAACGCATTTGTATTAACAACGCCGCGGAAGCCGCGCGTTTTCACAACGTGCATCCTGGTATTAATCATCCCATT
ATCTATGACGATCGCGTGGTGATGGTGGTAGGCATCAGCGGCGATCCCGCGGCGATAAGCCGCTATGCTGAACTGGCGGT
GCTCACCGCCGAACTGCTGGTCCGCCAGGCCATAGAGATGCGGGAAACCAACTGGCGGCAACGTCTGCGTGACACCTTGT
TTTGTCAGTATCTTGAACAAGGGGCTACACCCGCCGGGCAAGAAGCGCTTCATCGCCTGCTGGAACTTGGTTTCGATTTT
GATACACCGCGGGTTCCGATCGTAGTGACCGTGCAGGTCGAACAGCATCAGTTAAGCGACATACTGAGTACGCTGTTGCG
GGAATTCTCGCAGCTCTCCGGCGTAAGTGACGTTATTTTGCTGGGCAGCCATGAAATATTGATCCTCAACGCGCTAAGCG
AAGCCCAGGAAACCCTGCTGCGGGGCATTGAGTTTGTACTGAGTAATCAGATAAGCCATTACCATATCGGGATTGGCGTG
CAGGCGGACAGCGCCCCGGACATTCGCGAGGCCATTCGGTTCGCCCGCTCGGTGATCGAAGTGGGTAGCAAAGTGCAGCC
GCAGCGGCAGATCTACTACTTTCGCGAAATGGCAATGCTCTGCCTGTTCAGGGTGCTGGAAGACAGCTATATGGTCAATT
TTTTTATCAATAATGTACGCCAGCTGCTTGAGCATGATTCCGGCGAAGTACTGCTGGATACCCTGAGCAGCTTTATTGCC
AATAATGCCGAACCGGGCAAAACGTCGCTGCTGTTGGGGATTCATCGTAATACGCTCACCTATCGGCTGCAGCAAATTAA
AAAGCACATACAGCTCGATCCGATGGTCTTCACCGACCTGACGCAGCTGGCGGTGTCGGTACACTGTTATCGCCGGCTGA
ATCCGCGCCAGAGCGAATGGATTGATAGCTTAAGCTAA

Upstream 100 bases:

>100_bases
CGATGAACACATGCGAACCGCTCCTCGCCGACGCCGCGGAGAATGTTCTACGAACCTTTCTGAGCGGGTGGCGCGGAGAG
GCACATAAGCGGATAACTGT

Downstream 100 bases:

>100_bases
CGTACGATAGATTCGAATTGATGCCCCATCCGCCAGGATAAGTGGCCACCATGGCCACTTCTTTCCTGGCGTGGGTAGGA
AACTACGCTTTTGACGACGG

Product: putative sugar diacid utilization regulator

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MIITTALANEIVARAMAIIHHNVNVIDHHGQIIASGERHRIGEQHEVAQEVIRTGKRICINNAAEAARFHNVHPGINHPI
IYDDRVVMVVGISGDPAAISRYAELAVLTAELLVRQAIEMRETNWRQRLRDTLFCQYLEQGATPAGQEALHRLLELGFDF
DTPRVPIVVTVQVEQHQLSDILSTLLREFSQLSGVSDVILLGSHEILILNALSEAQETLLRGIEFVLSNQISHYHIGIGV
QADSAPDIREAIRFARSVIEVGSKVQPQRQIYYFREMAMLCLFRVLEDSYMVNFFINNVRQLLEHDSGEVLLDTLSSFIA
NNAEPGKTSLLLGIHRNTLTYRLQQIKKHIQLDPMVFTDLTQLAVSVHCYRRLNPRQSEWIDSLS

Sequences:

>Translated_385_residues
MIITTALANEIVARAMAIIHHNVNVIDHHGQIIASGERHRIGEQHEVAQEVIRTGKRICINNAAEAARFHNVHPGINHPI
IYDDRVVMVVGISGDPAAISRYAELAVLTAELLVRQAIEMRETNWRQRLRDTLFCQYLEQGATPAGQEALHRLLELGFDF
DTPRVPIVVTVQVEQHQLSDILSTLLREFSQLSGVSDVILLGSHEILILNALSEAQETLLRGIEFVLSNQISHYHIGIGV
QADSAPDIREAIRFARSVIEVGSKVQPQRQIYYFREMAMLCLFRVLEDSYMVNFFINNVRQLLEHDSGEVLLDTLSSFIA
NNAEPGKTSLLLGIHRNTLTYRLQQIKKHIQLDPMVFTDLTQLAVSVHCYRRLNPRQSEWIDSLS
>Mature_385_residues
MIITTALANEIVARAMAIIHHNVNVIDHHGQIIASGERHRIGEQHEVAQEVIRTGKRICINNAAEAARFHNVHPGINHPI
IYDDRVVMVVGISGDPAAISRYAELAVLTAELLVRQAIEMRETNWRQRLRDTLFCQYLEQGATPAGQEALHRLLELGFDF
DTPRVPIVVTVQVEQHQLSDILSTLLREFSQLSGVSDVILLGSHEILILNALSEAQETLLRGIEFVLSNQISHYHIGIGV
QADSAPDIREAIRFARSVIEVGSKVQPQRQIYYFREMAMLCLFRVLEDSYMVNFFINNVRQLLEHDSGEVLLDTLSSFIA
NNAEPGKTSLLLGIHRNTLTYRLQQIKKHIQLDPMVFTDLTQLAVSVHCYRRLNPRQSEWIDSLS

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=383, Percent_Identity=30.0261096605744, Blast_Score=157, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 43551; Mature: 43551

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIITTALANEIVARAMAIIHHNVNVIDHHGQIIASGERHRIGEQHEVAQEVIRTGKRICI
CEEEHHHHHHHHHHHHHHHHCCCCEEECCCCEEECCCHHCCCHHHHHHHHHHHCCCCEEE
NNAAEAARFHNVHPGINHPIIYDDRVVMVVGISGDPAAISRYAELAVLTAELLVRQAIEM
CCHHHHHHHCCCCCCCCCCEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
RETNWRQRLRDTLFCQYLEQGATPAGQEALHRLLELGFDFDTPRVPIVVTVQVEQHQLSD
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHH
ILSTLLREFSQLSGVSDVILLGSHEILILNALSEAQETLLRGIEFVLSNQISHYHIGIGV
HHHHHHHHHHHHCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
QADSAPDIREAIRFARSVIEVGSKVQPQRQIYYFREMAMLCLFRVLEDSYMVNFFINNVR
ECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLLEHDSGEVLLDTLSSFIANNAEPGKTSLLLGIHRNTLTYRLQQIKKHIQLDPMVFTDL
HHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHH
TQLAVSVHCYRRLNPRQSEWIDSLS
HHHHHHHHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure
MIITTALANEIVARAMAIIHHNVNVIDHHGQIIASGERHRIGEQHEVAQEVIRTGKRICI
CEEEHHHHHHHHHHHHHHHHCCCCEEECCCCEEECCCHHCCCHHHHHHHHHHHCCCCEEE
NNAAEAARFHNVHPGINHPIIYDDRVVMVVGISGDPAAISRYAELAVLTAELLVRQAIEM
CCHHHHHHHCCCCCCCCCCEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
RETNWRQRLRDTLFCQYLEQGATPAGQEALHRLLELGFDFDTPRVPIVVTVQVEQHQLSD
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHH
ILSTLLREFSQLSGVSDVILLGSHEILILNALSEAQETLLRGIEFVLSNQISHYHIGIGV
HHHHHHHHHHHHCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
QADSAPDIREAIRFARSVIEVGSKVQPQRQIYYFREMAMLCLFRVLEDSYMVNFFINNVR
ECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLLEHDSGEVLLDTLSSFIANNAEPGKTSLLLGIHRNTLTYRLQQIKKHIQLDPMVFTDL
HHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHH
TQLAVSVHCYRRLNPRQSEWIDSLS
HHHHHHHHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]