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The map label for this gene is ydgD [H]

Identifier: 238894587

GI number: 238894587

Start: 2484742

End: 2485554

Strand: Reverse

Name: ydgD [H]

Synonym: KP1_2586

Alternate gene names: 238894587

Gene position: 2485554-2484742 (Counterclockwise)

Preceding gene: 238894591

Following gene: 238894586

Centisome position: 47.36

GC content: 60.52

Gene sequence:

>813_bases
ATGCGTAGAGACGTTCTGTTATTACTGTGTTCATTTTATCTGTTACCTCTGGGCGCACATGCCGATGATAGCGGACTGAG
CGCCAAAGATATTAAGACGTTGTTTTTCGGTCACGATGACCGCAAAGCGGTGAACCGCCCCGAGGAGAGTCCGTGGGACG
CGATTGGCCAGCTGGAAACCGCCAGCGGCAATCTGTGTACGGCGACGCTCATCTCTCCGCATCTGGCGCTGACCGCGGGC
CACTGTCTGTTAACGCCCCCGCGCGGCAAGCCGGACAAAGCGGTCGCCCTGCGCTTTATTTCCCGCAAGGGCAACTGGGT
CTATGAGATCCACGGCATTGACGGGCGAGTCGATCCCAGCTTAGGCAGACGCCTGAAAGCCGATGGCGACGGCTGGATTG
TCCCTTCCGCTGCAGCGCCGTCCGATTTTGGTCTGATCGTGCTGCGCTATGCTCCGTCTGGCATTACGCCGATCCCGCTC
TTTCCGGGCAGCAAGGCCGATCTCACCGCCGCGCTGAAGGCGGCGGACCGTAAAGTTACCCAGTCTGGCTATCCTGAAGA
TCATCTCGATAATCTTTACAGCCACCAGGATTGCATCGTGACAGGGTGGGCGCAAACCAGCGTACTGTCGCATCAGTGTG
ACACCCTGCCTGGCGACAGCGGCTCGCCGCTGCTGCTGAAAACGGAGGACGGCTGGCAGGTGATCGCCGTGCAGAGTTCG
GCCCCCGGCCCGCAGGATCGCTGGCGGGCGGACAATCGCGCCATTGCGGTGACTGGCTTTCGCGATAAGCTGGAGGCGCT
TGCCGGTGAGTAA

Upstream 100 bases:

>100_bases
TGTGGTATACGGTTTGGCCTGTTTAGAATTATTGTTTACTTTCAAAAACTTAAATCTCCTGCTACTGTCAATAGACATCA
TAGCCTCCCCAGAGAGTGAT

Downstream 100 bases:

>100_bases
TGGACCGAGGCCGGTGAAGAATATCATTATTGACATCGTCCTGGCGGAAATGATTTTCCGCCAGCCGAAAGCAGTGAACC
TGCGCAGCCCTCAGCGTCAC

Product: putative enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRRDVLLLLCSFYLLPLGAHADDSGLSAKDIKTLFFGHDDRKAVNRPEESPWDAIGQLETASGNLCTATLISPHLALTAG
HCLLTPPRGKPDKAVALRFISRKGNWVYEIHGIDGRVDPSLGRRLKADGDGWIVPSAAAPSDFGLIVLRYAPSGITPIPL
FPGSKADLTAALKAADRKVTQSGYPEDHLDNLYSHQDCIVTGWAQTSVLSHQCDTLPGDSGSPLLLKTEDGWQVIAVQSS
APGPQDRWRADNRAIAVTGFRDKLEALAGE

Sequences:

>Translated_270_residues
MRRDVLLLLCSFYLLPLGAHADDSGLSAKDIKTLFFGHDDRKAVNRPEESPWDAIGQLETASGNLCTATLISPHLALTAG
HCLLTPPRGKPDKAVALRFISRKGNWVYEIHGIDGRVDPSLGRRLKADGDGWIVPSAAAPSDFGLIVLRYAPSGITPIPL
FPGSKADLTAALKAADRKVTQSGYPEDHLDNLYSHQDCIVTGWAQTSVLSHQCDTLPGDSGSPLLLKTEDGWQVIAVQSS
APGPQDRWRADNRAIAVTGFRDKLEALAGE
>Mature_270_residues
MRRDVLLLLCSFYLLPLGAHADDSGLSAKDIKTLFFGHDDRKAVNRPEESPWDAIGQLETASGNLCTATLISPHLALTAG
HCLLTPPRGKPDKAVALRFISRKGNWVYEIHGIDGRVDPSLGRRLKADGDGWIVPSAAAPSDFGLIVLRYAPSGITPIPL
FPGSKADLTAALKAADRKVTQSGYPEDHLDNLYSHQDCIVTGWAQTSVLSHQCDTLPGDSGSPLLLKTEDGWQVIAVQSS
APGPQDRWRADNRAIAVTGFRDKLEALAGE

Specific function: Unknown

COG id: COG3591

COG function: function code E; V8-like Glu-specific endopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S1B family [H]

Homologues:

Organism=Escherichia coli, GI1787882, Length=271, Percent_Identity=74.169741697417, Blast_Score=384, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009003
- InterPro:   IPR018114
- InterPro:   IPR001254
- InterPro:   IPR008256 [H]

Pfam domain/function: PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 29080; Mature: 29080

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00134 TRYPSIN_HIS ; PS00135 TRYPSIN_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRDVLLLLCSFYLLPLGAHADDSGLSAKDIKTLFFGHDDRKAVNRPEESPWDAIGQLET
CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEECCCCHHHHCCCCCCCHHHHCCEEC
ASGNLCTATLISPHLALTAGHCLLTPPRGKPDKAVALRFISRKGNWVYEIHGIDGRVDPS
CCCCEEEEEECCCCCEEECCCEEEECCCCCCCHHHEEEEECCCCCEEEEEECCCCCCCHH
LGRRLKADGDGWIVPSAAAPSDFGLIVLRYAPSGITPIPLFPGSKADLTAALKAADRKVT
HCCEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
QSGYPEDHLDNLYSHQDCIVTGWAQTSVLSHQCDTLPGDSGSPLLLKTEDGWQVIAVQSS
CCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEECC
APGPQDRWRADNRAIAVTGFRDKLEALAGE
CCCCHHHHCCCCCEEEEECCHHHHHHHCCC
>Mature Secondary Structure
MRRDVLLLLCSFYLLPLGAHADDSGLSAKDIKTLFFGHDDRKAVNRPEESPWDAIGQLET
CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEECCCCHHHHCCCCCCCHHHHCCEEC
ASGNLCTATLISPHLALTAGHCLLTPPRGKPDKAVALRFISRKGNWVYEIHGIDGRVDPS
CCCCEEEEEECCCCCEEECCCEEEECCCCCCCHHHEEEEECCCCCEEEEEECCCCCCCHH
LGRRLKADGDGWIVPSAAAPSDFGLIVLRYAPSGITPIPLFPGSKADLTAALKAADRKVT
HCCEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
QSGYPEDHLDNLYSHQDCIVTGWAQTSVLSHQCDTLPGDSGSPLLLKTEDGWQVIAVQSS
CCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEECC
APGPQDRWRADNRAIAVTGFRDKLEALAGE
CCCCHHHHCCCCCEEEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]