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The map label for this gene is oprF [H]

Identifier: 238894412

GI number: 238894412

Start: 2302974

End: 2304680

Strand: Direct

Name: oprF [H]

Synonym: KP1_2397

Alternate gene names: 238894412

Gene position: 2302974-2304680 (Clockwise)

Preceding gene: 238894411

Following gene: 238894413

Centisome position: 43.88

GC content: 65.14

Gene sequence:

>1707_bases
ATGAGCCCCGCGCAGCAGCGTGGGCTGGCGCTGTGGGCCAGTCTGCTGAGTGCGCTGGTGTGCCTGCTATTTTTGCCGGT
TCCCCGCTGGGGGGCGTGGCTCATTCTGCTGGTCACGCTGGCCCTGATCATCGGGATCTGGCGCATCGCCAGTCGTCGTA
CCGGACGTAACGTCGCATCAACCCTGGCCCCTCTCCCGGAGGGCGCTTATCGCCAGCCGGTGGTCCTCGTTTGCGGCGAC
CTGCCGTGTGTCTGGCCGCCAGCGTCACCGGTGCGAGTCGTCAAACAGGGCTGCTGGATCCGCGTGGAAAAGACGGAGGA
TCTGCAGCAGGTCGCGCGCCAGGTATTGAGCCAGCGGCCGGAATGGGGGCCTCAGCTGTCGGTGCTGCTCTGCGTCTGCC
CGCAGCGGCATGCGCAAAGCGATGCGCTGACCAGCGCTCTGCTGGCCCTGCGCTGGCAACTCAGCCAGCTGCGTCAGCAG
ACGGGGTATGCCGTACCGCTGGCGCTGCAGGGGCAGGTGGGCAGCGCGATGAGTCGCGACCTGTTGTGGCAGGCGGCGAT
ACCGGGTGAAGCGGTGAAAGTCTGGCAGCCCTCCTGCGCCCCCTGTTCCGTACCGGCCTGGGTAAGCGCCGGCGGGGCGG
CCGCGCTGGAGCAGCAGGTGCTGATGAACAGCCTGATGGGCTGGTTTGAACAGCACGTCCATGCCGTGTTGACGGAAGAG
AATACCGACCTGCCACCTCTGCCCCCTGCGGCCGTGCTGTGGGGCCTCGGGCCCTCGCTGCCTGGAAGTCTGGCATCGTC
GGCCTGGACGACGTGGTTATCCCGACATAGCGGCCTGTCGCGGGTAGCTGGCTGGCAGCCTGGCGAGAGCGACACCGGGG
ACGCTTCAGCTTTGCCGGAATTCATCCTGCCGCAGTTACCGGCGGGACGGGGACTCACGCCACGAGGCTGGGCCTGGCGC
GCGGCGCTCGCGATTTTCACCCTCGCGGCTGTCGCCGCGCTGCTCAGCAGTGGCTGGAACAATCGACAACTGCTGCAGCG
CGTGGGCGTCGATATTGCCCGTTATGAGCGGATTGCGATGGATGATTATCGACCAAAAGCCAGCGCTGTCAGGGTGCTGC
GTGAAGATGCCGCGCTGCTCGATAGCTGGGCGCGTAACGGCGTCCCGCTGCGCCTGAGTCTGGGCTTGTATCACGGGGAG
CAGATTCGCCTGCCGTTGCTGGAGGCGATTCGCGGTTACGTGCCGCCTCCGCCTCCGCCCAGGCCGGTGCAGCACGTCGC
GCCGGATGTCATCCGCCTTGACAGCATGTCGCTATTCGATACCGGGAAATGGGTACTGAAGCCTGGTTCGACAAAGCGGC
TGGTCAGCTCGCTGATGGACATTAAGGCCAGGCCCGGGTGGCTGATCGTGGTGGCGGGTCACACCGACAGCGTGGGTGAG
GAAAAAGCCAACCAGCTATTGTCGCTGAAACGTGCCGAATCGGTCCGCGACTGGATGCGCGATACCGGCGACGTGCCGGA
CAGCTGCTTTGCCGTTCAGGGCTATGGCGAAAGCCGACCAATTGCAACAAACGATACGCCGGAAGGCCGTGCGCTGAACC
GTCGTGTCGAAATCAGTCTGGTGCCGCAGGTAGACGCCTGCCGGTTACCGGACCAACCCTCTGCGTCATCCCAGGATGAT
GGCGCTTCACTACACAATGGAGAGTAA

Upstream 100 bases:

>100_bases
TACGTATTGGCCTGAGCGTGGTGGTGGTACTCGCCCTGTGGTGGGGGCTCAACCACTGGCTCGATCACCTGCTGCTGACC
TTGTTACCGGGGGAGGTGAA

Downstream 100 bases:

>100_bases
TTCCATGGCAATTCCTGTTTATCTTTGGCTGAAAGACGACGGCGGCGCGGACATTAAAGGGTCTGTCGACGTTCAGGATC
GTGAAGGCAGTATCGAAGTG

Product: putative outer membrane protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 568; Mature: 567

Protein sequence:

>568_residues
MSPAQQRGLALWASLLSALVCLLFLPVPRWGAWLILLVTLALIIGIWRIASRRTGRNVASTLAPLPEGAYRQPVVLVCGD
LPCVWPPASPVRVVKQGCWIRVEKTEDLQQVARQVLSQRPEWGPQLSVLLCVCPQRHAQSDALTSALLALRWQLSQLRQQ
TGYAVPLALQGQVGSAMSRDLLWQAAIPGEAVKVWQPSCAPCSVPAWVSAGGAAALEQQVLMNSLMGWFEQHVHAVLTEE
NTDLPPLPPAAVLWGLGPSLPGSLASSAWTTWLSRHSGLSRVAGWQPGESDTGDASALPEFILPQLPAGRGLTPRGWAWR
AALAIFTLAAVAALLSSGWNNRQLLQRVGVDIARYERIAMDDYRPKASAVRVLREDAALLDSWARNGVPLRLSLGLYHGE
QIRLPLLEAIRGYVPPPPPPRPVQHVAPDVIRLDSMSLFDTGKWVLKPGSTKRLVSSLMDIKARPGWLIVVAGHTDSVGE
EKANQLLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQVDACRLPDQPSASSQDD
GASLHNGE

Sequences:

>Translated_568_residues
MSPAQQRGLALWASLLSALVCLLFLPVPRWGAWLILLVTLALIIGIWRIASRRTGRNVASTLAPLPEGAYRQPVVLVCGD
LPCVWPPASPVRVVKQGCWIRVEKTEDLQQVARQVLSQRPEWGPQLSVLLCVCPQRHAQSDALTSALLALRWQLSQLRQQ
TGYAVPLALQGQVGSAMSRDLLWQAAIPGEAVKVWQPSCAPCSVPAWVSAGGAAALEQQVLMNSLMGWFEQHVHAVLTEE
NTDLPPLPPAAVLWGLGPSLPGSLASSAWTTWLSRHSGLSRVAGWQPGESDTGDASALPEFILPQLPAGRGLTPRGWAWR
AALAIFTLAAVAALLSSGWNNRQLLQRVGVDIARYERIAMDDYRPKASAVRVLREDAALLDSWARNGVPLRLSLGLYHGE
QIRLPLLEAIRGYVPPPPPPRPVQHVAPDVIRLDSMSLFDTGKWVLKPGSTKRLVSSLMDIKARPGWLIVVAGHTDSVGE
EKANQLLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQVDACRLPDQPSASSQDD
GASLHNGE
>Mature_567_residues
SPAQQRGLALWASLLSALVCLLFLPVPRWGAWLILLVTLALIIGIWRIASRRTGRNVASTLAPLPEGAYRQPVVLVCGDL
PCVWPPASPVRVVKQGCWIRVEKTEDLQQVARQVLSQRPEWGPQLSVLLCVCPQRHAQSDALTSALLALRWQLSQLRQQT
GYAVPLALQGQVGSAMSRDLLWQAAIPGEAVKVWQPSCAPCSVPAWVSAGGAAALEQQVLMNSLMGWFEQHVHAVLTEEN
TDLPPLPPAAVLWGLGPSLPGSLASSAWTTWLSRHSGLSRVAGWQPGESDTGDASALPEFILPQLPAGRGLTPRGWAWRA
ALAIFTLAAVAALLSSGWNNRQLLQRVGVDIARYERIAMDDYRPKASAVRVLREDAALLDSWARNGVPLRLSLGLYHGEQ
IRLPLLEAIRGYVPPPPPPRPVQHVAPDVIRLDSMSLFDTGKWVLKPGSTKRLVSSLMDIKARPGWLIVVAGHTDSVGEE
KANQLLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISLVPQVDACRLPDQPSASSQDDG
ASLHNGE

Specific function: Known to stabilize the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=104, Percent_Identity=42.3076923076923, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788957, Length=104, Percent_Identity=36.5384615384615, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 61747; Mature: 61616

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPAQQRGLALWASLLSALVCLLFLPVPRWGAWLILLVTLALIIGIWRIASRRTGRNVAS
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TLAPLPEGAYRQPVVLVCGDLPCVWPPASPVRVVKQGCWIRVEKTEDLQQVARQVLSQRP
HHCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCEEEEECHHHHHHHHHHHHHCCC
EWGPQLSVLLCVCPQRHAQSDALTSALLALRWQLSQLRQQTGYAVPLALQGQVGSAMSRD
CCCCCCEEEEEECCCHHCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
LLWQAAIPGEAVKVWQPSCAPCSVPAWVSAGGAAALEQQVLMNSLMGWFEQHVHAVLTEE
HHHHHCCCCCEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NTDLPPLPPAAVLWGLGPSLPGSLASSAWTTWLSRHSGLSRVAGWQPGESDTGDASALPE
CCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCHH
FILPQLPAGRGLTPRGWAWRAALAIFTLAAVAALLSSGWNNRQLLQRVGVDIARYERIAM
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHH
DDYRPKASAVRVLREDAALLDSWARNGVPLRLSLGLYHGEQIRLPLLEAIRGYVPPPPPP
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEECHHHHHHHHCCCCCCCCC
RPVQHVAPDVIRLDSMSLFDTGKWVLKPGSTKRLVSSLMDIKARPGWLIVVAGHTDSVGE
CCHHHHCCCCEEECCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCH
EKANQLLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
VPQVDACRLPDQPSASSQDDGASLHNGE
CCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SPAQQRGLALWASLLSALVCLLFLPVPRWGAWLILLVTLALIIGIWRIASRRTGRNVAS
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TLAPLPEGAYRQPVVLVCGDLPCVWPPASPVRVVKQGCWIRVEKTEDLQQVARQVLSQRP
HHCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCEEEEECHHHHHHHHHHHHHCCC
EWGPQLSVLLCVCPQRHAQSDALTSALLALRWQLSQLRQQTGYAVPLALQGQVGSAMSRD
CCCCCCEEEEEECCCHHCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
LLWQAAIPGEAVKVWQPSCAPCSVPAWVSAGGAAALEQQVLMNSLMGWFEQHVHAVLTEE
HHHHHCCCCCEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NTDLPPLPPAAVLWGLGPSLPGSLASSAWTTWLSRHSGLSRVAGWQPGESDTGDASALPE
CCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCHH
FILPQLPAGRGLTPRGWAWRAALAIFTLAAVAALLSSGWNNRQLLQRVGVDIARYERIAM
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHH
DDYRPKASAVRVLREDAALLDSWARNGVPLRLSLGLYHGEQIRLPLLEAIRGYVPPPPPP
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEECHHHHHHHHCCCCCCCCC
RPVQHVAPDVIRLDSMSLFDTGKWVLKPGSTKRLVSSLMDIKARPGWLIVVAGHTDSVGE
CCHHHHCCCCEEECCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCH
EKANQLLSLKRAESVRDWMRDTGDVPDSCFAVQGYGESRPIATNDTPEGRALNRRVEISL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
VPQVDACRLPDQPSASSQDDGASLHNGE
CCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]