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The map label for this gene is yhjC [H]

Identifier: 238894404

GI number: 238894404

Start: 2293921

End: 2294835

Strand: Reverse

Name: yhjC [H]

Synonym: KP1_2387

Alternate gene names: 238894404

Gene position: 2294835-2293921 (Counterclockwise)

Preceding gene: 238894407

Following gene: 238894398

Centisome position: 43.72

GC content: 65.14

Gene sequence:

>915_bases
ATGGATAAACTGGATACCCTGACCCTGTTCGTGCGCATCGTCGAACGGGGTTCGTTCAGCGCCGCCGCCGCGGATCTGGG
TTTTTCCCGGCCGGTGGCGACTGCAGCCATTAAGGCGCTGGAGGCTAGCCTTGGGGCGCGCCTGCTGCAGCGCACCACCC
GGCACGTGCAGCCGACGGCGGAGGGCTCGCTGTATTATCAGCGCTGCGTGTCCATCCTGGCGGCCCTGGAGGAGGCCAAC
CGCAGCGCCGGGGGGAGCATCTCCGGCACCATCCGGGTGGACGTGGCGGGCAATCTGGCGCGAACCCTGCTGCTGCCCGC
GCTGCCGCAGTTTCTCGCCCGCTATCCGGCCATTACGTTACAGATAGGCGAAAGCGAGCGCGACGTCGATCTGGTCCGCG
AAGGGGTGGATTGCGTCATTCGCGGCGGCCATCTTCCCGACAGCGAGATGATTTGCCGGCCGCTCGCCAGGCTACAGGAG
ATCACCTGCGCCAGCCCGGCCTACCTCGCCCGGTACGGCACCCCGCATACGATTGACGGGCTGGCGGGACACGTGGCGAT
CGGTTTTGTTTCAGCGCGCACGCACCGTACCTTGCCGCTGACTTTTACCCTGGATGGTCGCCAGACCGAGGTCAGTTTGC
CCTGTCGGCTGCTGACCTCCGATGCCGACGTCGGCGCCGAAGCGTCAAGGCTTGGCTTTGGCCTGTATCAGGCACCCTTA
TCCCGCCTTGAGGCCGATCTGGCATCCGGAGTATTAACGGAGGTGCTGGCTGATTTTCGCCCTGCGCCGCTGCCGCTCTC
CCTGCTCTACCCCAGCAGCCGGCAGCTCTCTGCCCGGGTACAGGTATTTATCGACTGGGTGACGGTGCTGATGAAGGCGC
CCCTGGCGCAGCAGGCATCCGGAAGGCTAAAATAA

Upstream 100 bases:

>100_bases
CTTTTATCTCTGCTGAAAACATGAGCGATTATAGGCCTCTGAATGCCGACGATAAGACCGCATGGCGCGACAGGATTGTT
TTGCCAGCTGGAACAATGCC

Downstream 100 bases:

>100_bases
TGTTTGCTATTATTTGCGGCTCGTGCGTTAATCGTTAAGTCGATTTACCAGACGAAAAGTTATTATCTAAGTACGTGTTC
TCATCTCCAGGCGTTATCCC

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MDKLDTLTLFVRIVERGSFSAAAADLGFSRPVATAAIKALEASLGARLLQRTTRHVQPTAEGSLYYQRCVSILAALEEAN
RSAGGSISGTIRVDVAGNLARTLLLPALPQFLARYPAITLQIGESERDVDLVREGVDCVIRGGHLPDSEMICRPLARLQE
ITCASPAYLARYGTPHTIDGLAGHVAIGFVSARTHRTLPLTFTLDGRQTEVSLPCRLLTSDADVGAEASRLGFGLYQAPL
SRLEADLASGVLTEVLADFRPAPLPLSLLYPSSRQLSARVQVFIDWVTVLMKAPLAQQASGRLK

Sequences:

>Translated_304_residues
MDKLDTLTLFVRIVERGSFSAAAADLGFSRPVATAAIKALEASLGARLLQRTTRHVQPTAEGSLYYQRCVSILAALEEAN
RSAGGSISGTIRVDVAGNLARTLLLPALPQFLARYPAITLQIGESERDVDLVREGVDCVIRGGHLPDSEMICRPLARLQE
ITCASPAYLARYGTPHTIDGLAGHVAIGFVSARTHRTLPLTFTLDGRQTEVSLPCRLLTSDADVGAEASRLGFGLYQAPL
SRLEADLASGVLTEVLADFRPAPLPLSLLYPSSRQLSARVQVFIDWVTVLMKAPLAQQASGRLK
>Mature_304_residues
MDKLDTLTLFVRIVERGSFSAAAADLGFSRPVATAAIKALEASLGARLLQRTTRHVQPTAEGSLYYQRCVSILAALEEAN
RSAGGSISGTIRVDVAGNLARTLLLPALPQFLARYPAITLQIGESERDVDLVREGVDCVIRGGHLPDSEMICRPLARLQE
ITCASPAYLARYGTPHTIDGLAGHVAIGFVSARTHRTLPLTFTLDGRQTEVSLPCRLLTSDADVGAEASRLGFGLYQAPL
SRLEADLASGVLTEVLADFRPAPLPLSLLYPSSRQLSARVQVFIDWVTVLMKAPLAQQASGRLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=38.8704318936877, Blast_Score=201, Evalue=7e-53,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=35.6164383561644, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1789639, Length=309, Percent_Identity=28.4789644012945, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=30.1369863013699, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=28.4246575342466, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1789440, Length=262, Percent_Identity=28.2442748091603, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=27.5862068965517, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788706, Length=180, Percent_Identity=29.4444444444444, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI157672245, Length=153, Percent_Identity=32.0261437908497, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788297, Length=147, Percent_Identity=30.6122448979592, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789173, Length=186, Percent_Identity=28.494623655914, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787601, Length=127, Percent_Identity=27.5590551181102, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32644; Mature: 32644

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLDTLTLFVRIVERGSFSAAAADLGFSRPVATAAIKALEASLGARLLQRTTRHVQPTA
CCCHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EGSLYYQRCVSILAALEEANRSAGGSISGTIRVDVAGNLARTLLLPALPQFLARYPAITL
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCEEEE
QIGESERDVDLVREGVDCVIRGGHLPDSEMICRPLARLQEITCASPAYLARYGTPHTIDG
EECCCCCHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHH
LAGHVAIGFVSARTHRTLPLTFTLDGRQTEVSLPCRLLTSDADVGAEASRLGFGLYQAPL
HHHHHHHEEEECCCCCEEEEEEEECCCCEEEECCEEEEECCCCCCCCHHHHHHHHHHHHH
SRLEADLASGVLTEVLADFRPAPLPLSLLYPSSRQLSARVQVFIDWVTVLMKAPLAQQAS
HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHCC
GRLK
CCCC
>Mature Secondary Structure
MDKLDTLTLFVRIVERGSFSAAAADLGFSRPVATAAIKALEASLGARLLQRTTRHVQPTA
CCCHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EGSLYYQRCVSILAALEEANRSAGGSISGTIRVDVAGNLARTLLLPALPQFLARYPAITL
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCEEEE
QIGESERDVDLVREGVDCVIRGGHLPDSEMICRPLARLQEITCASPAYLARYGTPHTIDG
EECCCCCHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHH
LAGHVAIGFVSARTHRTLPLTFTLDGRQTEVSLPCRLLTSDADVGAEASRLGFGLYQAPL
HHHHHHHEEEECCCCCEEEEEEEECCCCEEEECCEEEEECCCCCCCCHHHHHHHHHHHHH
SRLEADLASGVLTEVLADFRPAPLPLSLLYPSSRQLSARVQVFIDWVTVLMKAPLAQQAS
HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHCC
GRLK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]