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The map label for this gene is yciT [H]

Identifier: 238894342

GI number: 238894342

Start: 2232063

End: 2232812

Strand: Reverse

Name: yciT [H]

Synonym: KP1_2323

Alternate gene names: 238894342

Gene position: 2232812-2232063 (Counterclockwise)

Preceding gene: 238894343

Following gene: 238894341

Centisome position: 42.54

GC content: 55.33

Gene sequence:

>750_bases
ATGAACGCCCGACAACAAAGTATTTTGCAAGTGGTCATCGATAAAGGCCGCATGAGCGTCGCCGATCTGGCGAAGATGAC
CGGTGTCTCTGAGGTTACTATTCGTCAGGATTTGAATTTGCTGGAAAAGCAGAGCTATTTGCGCCGTACTCATGGCTATG
CCGTACCGCTGGACAGCGAAGATGTCGAAACCCGCATGATGACCCATTTCGCCATTAAGCGTGAGCTGGCCAGCCGGGCT
GCGGCGCTAGTGAATACCGGTGAAACGGTATTTATCGAAAACGGCAGCAGCAATGCCCTGCTGGCGCGTACGCTGGCCGA
GCGCGGCGATATCACCATCATTACCGTCAGCAGCTATATCGCCCATCTGCTGAAAGAGACCCCAGGAGAGGTGATCCTGC
TGGGCGGAATTTATCAGAAACGCAGTGAGAGTATGGTCGGTCCGCTAACCCGTCAGTTCATCCAGCAGGTGCATTTCAGC
AAAGCCTTCATCGGGATCGACGGTTGGCAGGCGGAAACCGGCTTTACCGGCCGCGATATGATGCGTGCGGACGTGGTGAA
CGCCGTGCTGGAGAAGCATTGTGAGGCAATTATTCTTAGCGACAGTTCAAAATTCAGCGCGGTACATCCCTATCCGCTCG
GTCCCGCCGGCCGCTTTAATCGCGTTATTACCGACGATCGCTTACCGGACGCCTGTCGCGAACAATTGCTCCGCAGCGGC
CTGACCGTCGATATCGTGCCCTACATCTGA

Upstream 100 bases:

>100_bases
ACCAACCCAAGGCGCCCTGGGAAATCTGAATATCAGCCATGCCGCAGCCGGCCATATGGACCGGTTGCTCGCCATATAGC
CCCCTAACAGTGATGTTGCT

Downstream 100 bases:

>100_bases
TCCTCCGCCGCCCCATCTCCTGCCAAAGCGCCGGAAGGGGCGCTTTATCGCTCTGAGAGTATTCCGAGCCGCTAATTAAG
ACTTTTTACCTGACGATAAA

Product: putative DeoR-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNARQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDSEDVETRMMTHFAIKRELASRA
AALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPGEVILLGGIYQKRSESMVGPLTRQFIQQVHFS
KAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDDRLPDACREQLLRSG
LTVDIVPYI

Sequences:

>Translated_249_residues
MNARQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDSEDVETRMMTHFAIKRELASRA
AALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPGEVILLGGIYQKRSESMVGPLTRQFIQQVHFS
KAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDDRLPDACREQLLRSG
LTVDIVPYI
>Mature_249_residues
MNARQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDSEDVETRMMTHFAIKRELASRA
AALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPGEVILLGGIYQKRSESMVGPLTRQFIQQVHFS
KAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDDRLPDACREQLLRSG
LTVDIVPYI

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787540, Length=247, Percent_Identity=74.0890688259109, Blast_Score=376, Evalue=1e-106,
Organism=Escherichia coli, GI1789519, Length=250, Percent_Identity=30.4, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1789059, Length=251, Percent_Identity=30.6772908366534, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI226510968, Length=248, Percent_Identity=27.0161290322581, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI87082344, Length=250, Percent_Identity=24.8, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788069, Length=227, Percent_Identity=26.431718061674, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790753, Length=244, Percent_Identity=26.2295081967213, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789829, Length=231, Percent_Identity=28.1385281385281, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789170, Length=232, Percent_Identity=25, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790635, Length=251, Percent_Identity=25.0996015936255, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27590; Mature: 27590

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNARQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDSE
CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
DVETRMMTHFAIKRELASRAAALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEHHHHH
AHLLKETPGEVILLGGIYQKRSESMVGPLTRQFIQQVHFSKAFIGIDGWQAETGFTGRDM
HHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHH
MRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDDRLPDACREQLLRSG
HHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
LTVDIVPYI
CCEEEECCC
>Mature Secondary Structure
MNARQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDSE
CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
DVETRMMTHFAIKRELASRAAALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEHHHHH
AHLLKETPGEVILLGGIYQKRSESMVGPLTRQFIQQVHFSKAFIGIDGWQAETGFTGRDM
HHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHH
MRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDDRLPDACREQLLRSG
HHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
LTVDIVPYI
CCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]