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The map label for this gene is yciM [H]

Identifier: 238894338

GI number: 238894338

Start: 2229013

End: 2230182

Strand: Direct

Name: yciM [H]

Synonym: KP1_2319

Alternate gene names: 238894338

Gene position: 2229013-2230182 (Clockwise)

Preceding gene: 238894337

Following gene: 238894339

Centisome position: 42.47

GC content: 58.46

Gene sequence:

>1170_bases
ATGCTGGAGTTGTTGTTTCTGCTTTTACCCGTTGCCGCCGCTTACGGCTGGTACATGGGGCGCAGAAGTGCACAACAGTC
CAAACAGGACGATGCGAGCCGCCTGTCGCGAGATTACGTGGCGGGGGTTAACTTCCTGCTCAGCAACCAGCAGGATAAAG
CCGTCGACCTGTTCCTTGATATGCTGAAAGAGGATACCGGTACCGTTGAGGCGCACCTGACGCTCGGTAATTTGTTCCGT
TCGCGCGGCGAAGTCGACCGCGCGATTCGAATTCACCAGAGCCTGATGGAAAGCGCGTCGTTAACCTACGATCAGCGCCT
GTTGGCGGTGCAGCAGCTGGGACGGGATTATATGGCCGCCGGACTGTATGACCGCGCGGAAGACATGTTCAAACAGCTGG
TGGATGAGACCGATTTCCGCCTCGGCGCGCTGCAGCAACTGCTGCAGATTTACCAGGCGACCAGCGACTGGCAGTCGGCT
ATTGAAGTGGCTGAACGGCTGGTGAAACTGGGGAAAGAGAAACATCGTGGCGAAATCGCCAACTTCTGGTGCGAACTGGC
CCTGCAGCAGATGGCAGCCAACGATCTGGATAAAGCGATGGCGTTGTTGAGAAAAGGCGCCGCCGCGGACCGCAACAGCG
CCCGGGTATCGATCATGATGGGCCGGGTGTGGATGGAAAAGGGCGACTACGCCAAAGCGGTGGAGAGCCTCGAGCGGGTT
ATCGATCAGGATAAAGAGCTGGTGGGTGAAACGCTGGAGATGCTGCAGACCTGCTACCAGCAGCTCGGCAAAACCGATGA
ATGGGAAGTTTTTCTGCGCCGCTGCGTGGAGGAGAACGCCGGGGCGACCGCCGAACTGATGCTGGCGCAGATCCTTGAGC
AACGGGAAGGCGTCGAAGCGGCGCAAAACTACGTCACCCGGCAGCTGGAACGCCACCCGACCATGCGCGTCTTCCATAAG
CTGATGGACTACCATCTCAACGAAGCGGAAGAAGGGCGGGCGAAAGAAAGCCTTGGGGTGCTGCGAAACATGGTTGGTGA
GCAGGTGCGCAGCAAACCACGCTATCGCTGCCAGAAATGCGGGTTTACCGCTCATACACTCTACTGGCATTGTCCGTCCT
GCCGCTCGTGGGCGACCATTAAACCCATTCGCGGTCTCGACGGCCAGTAA

Upstream 100 bases:

>100_bases
GCGCGCGGAGCGGAAAATTAAGCGTCTTGAGCATCAGATTGCCCCCGTCAGCCCGGCGGCTGTCGACGCAGGCGTGCCTG
CGGTGAAGGAATAACCTCTT

Downstream 100 bases:

>100_bases
AGCCAAAAAAAAGCCCTCCGTTAGTTACAACATACTTATCGCTTCACTCCTCTCCAGGCGCGGCCCCGGCAGCGCCATCG
TCCGGTCAGGGCAGGTACGG

Product: tetratricopeptide repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQSKQDDASRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFR
SRGEVDRAIRIHQSLMESASLTYDQRLLAVQQLGRDYMAAGLYDRAEDMFKQLVDETDFRLGALQQLLQIYQATSDWQSA
IEVAERLVKLGKEKHRGEIANFWCELALQQMAANDLDKAMALLRKGAAADRNSARVSIMMGRVWMEKGDYAKAVESLERV
IDQDKELVGETLEMLQTCYQQLGKTDEWEVFLRRCVEENAGATAELMLAQILEQREGVEAAQNYVTRQLERHPTMRVFHK
LMDYHLNEAEEGRAKESLGVLRNMVGEQVRSKPRYRCQKCGFTAHTLYWHCPSCRSWATIKPIRGLDGQ

Sequences:

>Translated_389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQSKQDDASRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFR
SRGEVDRAIRIHQSLMESASLTYDQRLLAVQQLGRDYMAAGLYDRAEDMFKQLVDETDFRLGALQQLLQIYQATSDWQSA
IEVAERLVKLGKEKHRGEIANFWCELALQQMAANDLDKAMALLRKGAAADRNSARVSIMMGRVWMEKGDYAKAVESLERV
IDQDKELVGETLEMLQTCYQQLGKTDEWEVFLRRCVEENAGATAELMLAQILEQREGVEAAQNYVTRQLERHPTMRVFHK
LMDYHLNEAEEGRAKESLGVLRNMVGEQVRSKPRYRCQKCGFTAHTLYWHCPSCRSWATIKPIRGLDGQ
>Mature_389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQSKQDDASRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFR
SRGEVDRAIRIHQSLMESASLTYDQRLLAVQQLGRDYMAAGLYDRAEDMFKQLVDETDFRLGALQQLLQIYQATSDWQSA
IEVAERLVKLGKEKHRGEIANFWCELALQQMAANDLDKAMALLRKGAAADRNSARVSIMMGRVWMEKGDYAKAVESLERV
IDQDKELVGETLEMLQTCYQQLGKTDEWEVFLRRCVEENAGATAELMLAQILEQREGVEAAQNYVTRQLERHPTMRVFHK
LMDYHLNEAEEGRAKESLGVLRNMVGEQVRSKPRYRCQKCGFTAHTLYWHCPSCRSWATIKPIRGLDGQ

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI2367116, Length=379, Percent_Identity=86.2796833773087, Blast_Score=688, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44499; Mature: 44499

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLELLFLLLPVAAAYGWYMGRRSAQQSKQDDASRLSRDYVAGVNFLLSNQQDKAVDLFLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
MLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQSLMESASLTYDQRLLAVQQLGRDYMAA
HHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
GLYDRAEDMFKQLVDETDFRLGALQQLLQIYQATSDWQSAIEVAERLVKLGKEKHRGEIA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NFWCELALQQMAANDLDKAMALLRKGAAADRNSARVSIMMGRVWMEKGDYAKAVESLERV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
IDQDKELVGETLEMLQTCYQQLGKTDEWEVFLRRCVEENAGATAELMLAQILEQREGVEA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHH
AQNYVTRQLERHPTMRVFHKLMDYHLNEAEEGRAKESLGVLRNMVGEQVRSKPRYRCQKC
HHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
GFTAHTLYWHCPSCRSWATIKPIRGLDGQ
CCCHHHHEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]