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The map label for this gene is ymfK [C]

Identifier: 238894195

GI number: 238894195

Start: 2097310

End: 2098035

Strand: Reverse

Name: ymfK [C]

Synonym: KP1_2159

Alternate gene names: 238894195

Gene position: 2098035-2097310 (Counterclockwise)

Preceding gene: 238894207

Following gene: 238894193

Centisome position: 39.97

GC content: 44.63

Gene sequence:

>726_bases
ATGGATAGTAGGATATCTTACATAGAAAGGTCAAGGACTCCTACACTGATAAATGGTAGGATTACCTACATGAAAATGAA
TGATCGTATCCGCGCACGACGCAAAGAACTTAAACTTACCCAAGCCGTATTGGGTAAGCTTGTCGGCGTTAACAGGGTTA
CCGTCACTGGATGGGAGTCGGGTGATTACGCTCCTGGAGGTTCAAACCTTCAGGCGCTTTCTGCTGCACTAAAATGTAGC
CCTAAATGGCTTATTGATGGCATTGGTGAGCCTGATAATGAGGAACCGAGCTTTCGCCCCACTGAAAAATTCGGAGTTAA
AGAAATTCCAGTATTGTCATGGGTTCAGGCAGGAGAATGGACAGAATCAGGTTCTCCTATGACACGTAACGATATCTCCG
ACTGGATTTTTACAACTGCAAATCTTTCTGATGAAGGTTTTGCTTTACGCGTTCGCGGCGATTCAATGACAAATCCGAAT
GGTGCGCCAAGCATACCGGAAGGCTCAATCGTGATCGTAGATCCCGACTTTGGAAGTCCTTACGAAGTAAACGGAAAAAT
TGTTGTGGCTCAGATAGATGGCTCCACTGAGGCAACACTCAAGAAATTTGTTATTGATGGACCAATGAAATATTTAGTTC
CGTTAAACCCCAATTACAGAGTGCTTGAGGTTAACGGGAACTGCCGTATCGTTGGGGTTGTTAAACAAGTAGTCACTGAC
CTCTAG

Upstream 100 bases:

>100_bases
GAGAAATGCCCAAGAGTCGGGCCAAATTGCTTACCCCACCAAAGTAAGAAATAACGTCATCTTTATTCATAAAAGCCTCA
ACAGTAGTTAATAGGAACAC

Downstream 100 bases:

>100_bases
TAAACTTCTATGCCCAACCTAAACCGCGTCCTGCGGTTTTTTTACGCCCCTAAATGTAAGATTTCCTACTTTTAATGTTG
ACAGCAAAAGGTAAGATACC

Product: putative repressor protein of prophage

Products: NA

Alternate protein names: ORF-96 protein [H]

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MDSRISYIERSRTPTLINGRITYMKMNDRIRARRKELKLTQAVLGKLVGVNRVTVTGWESGDYAPGGSNLQALSAALKCS
PKWLIDGIGEPDNEEPSFRPTEKFGVKEIPVLSWVQAGEWTESGSPMTRNDISDWIFTTANLSDEGFALRVRGDSMTNPN
GAPSIPEGSIVIVDPDFGSPYEVNGKIVVAQIDGSTEATLKKFVIDGPMKYLVPLNPNYRVLEVNGNCRIVGVVKQVVTD
L

Sequences:

>Translated_241_residues
MDSRISYIERSRTPTLINGRITYMKMNDRIRARRKELKLTQAVLGKLVGVNRVTVTGWESGDYAPGGSNLQALSAALKCS
PKWLIDGIGEPDNEEPSFRPTEKFGVKEIPVLSWVQAGEWTESGSPMTRNDISDWIFTTANLSDEGFALRVRGDSMTNPN
GAPSIPEGSIVIVDPDFGSPYEVNGKIVVAQIDGSTEATLKKFVIDGPMKYLVPLNPNYRVLEVNGNCRIVGVVKQVVTD
L
>Mature_241_residues
MDSRISYIERSRTPTLINGRITYMKMNDRIRARRKELKLTQAVLGKLVGVNRVTVTGWESGDYAPGGSNLQALSAALKCS
PKWLIDGIGEPDNEEPSFRPTEKFGVKEIPVLSWVQAGEWTESGSPMTRNDISDWIFTTANLSDEGFALRVRGDSMTNPN
GAPSIPEGSIVIVDPDFGSPYEVNGKIVVAQIDGSTEATLKKFVIDGPMKYLVPLNPNYRVLEVNGNCRIVGVVKQVVTD
L

Specific function: May control the expression of the integrase and inhibit excision of the mobile element R391, and regulate the expression of other genes as well [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787391, Length=128, Percent_Identity=33.59375, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787853, Length=97, Percent_Identity=40.2061855670103, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 26473; Mature: 26473

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSRISYIERSRTPTLINGRITYMKMNDRIRARRKELKLTQAVLGKLVGVNRVTVTGWES
CCCHHHHHHHCCCCEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
GDYAPGGSNLQALSAALKCSPKWLIDGIGEPDNEEPSFRPTEKFGVKEIPVLSWVQAGEW
CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCHHHEEECCCC
TESGSPMTRNDISDWIFTTANLSDEGFALRVRGDSMTNPNGAPSIPEGSIVIVDPDFGSP
CCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCC
YEVNGKIVVAQIDGSTEATLKKFVIDGPMKYLVPLNPNYRVLEVNGNCRIVGVVKQVVTD
EEECCEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCEEEEEECCCEEEEHHHHHHHHC
L
C
>Mature Secondary Structure
MDSRISYIERSRTPTLINGRITYMKMNDRIRARRKELKLTQAVLGKLVGVNRVTVTGWES
CCCHHHHHHHCCCCEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
GDYAPGGSNLQALSAALKCSPKWLIDGIGEPDNEEPSFRPTEKFGVKEIPVLSWVQAGEW
CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCHHHEEECCCC
TESGSPMTRNDISDWIFTTANLSDEGFALRVRGDSMTNPNGAPSIPEGSIVIVDPDFGSP
CCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCC
YEVNGKIVVAQIDGSTEATLKKFVIDGPMKYLVPLNPNYRVLEVNGNCRIVGVVKQVVTD
EEECCEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCEEEEEECCCEEEEHHHHHHHHC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157923; 12193633 [H]