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The map label for this gene is bssS [H]

Identifier: 238894108

GI number: 238894108

Start: 2008648

End: 2008905

Strand: Reverse

Name: bssS [H]

Synonym: KP1_2060

Alternate gene names: 238894108

Gene position: 2008905-2008648 (Counterclockwise)

Preceding gene: 238894109

Following gene: 238894107

Centisome position: 38.28

GC content: 48.06

Gene sequence:

>258_bases
ATGATGGAAAAAAATAATGAAGTCATTCAGACCCATCCCCTCGTTGGATGGGACATCAGCACCGTTGATAGCTACGATGC
GCTGATGTTGCGCCTGCACTACCAGAACCCCACTCAAGAAAACAGTAATGATGCTGAGATCGGCCAGACGCTATGGCTAA
CGACGGACGTCGCACGTCAGTTTATTTCAATCCTGGAAGCAGGCATTGCGAAGATTGAATCTGGCGAATACCAGGAAAAC
GAGTATCGCCGACATTAA

Upstream 100 bases:

>100_bases
TTCTCGAGTTTATTCTTGATCCCTGATATAATTAACTTGCTTCAAAAAATATGCATTAAACCTCGAGAATTGTTGTCTTT
TAACATATGAATAAGGGGTT

Downstream 100 bases:

>100_bases
CGCGGCTTGCGAATGACTTAACATTAAACTTAACAGGCACCTGCGGGTGCCTGAATTATTTTCGGGCTTGTATAAGCACA
GGGAGTTAATTACCCTGCTA

Product: biofilm formation regulatory protein BssS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MMEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQNPTQENSNDAEIGQTLWLTTDVARQFISILEAGIAKIESGEYQEN
EYRRH

Sequences:

>Translated_85_residues
MMEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQNPTQENSNDAEIGQTLWLTTDVARQFISILEAGIAKIESGEYQEN
EYRRH
>Mature_85_residues
MMEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQNPTQENSNDAEIGQTLWLTTDVARQFISILEAGIAKIESGEYQEN
EYRRH

Specific function: Represses biofilm formation in M9C glu and LB glu media but not in M9C and LB media. Seems to act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signaling pathways. C

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787299, Length=84, Percent_Identity=84.5238095238095, Blast_Score=152, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020273
- ProDom:   PD060858 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9868; Mature: 9868

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQNPTQENSNDAEIGQTLWLTTDVARQ
CCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHEECHHHHHH
FISILEAGIAKIESGEYQENEYRRH
HHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MMEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQNPTQENSNDAEIGQTLWLTTDVARQ
CCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHEECHHHHHH
FISILEAGIAKIESGEYQENEYRRH
HHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]