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The map label for this gene is ycdO [H]

Identifier: 238894085

GI number: 238894085

Start: 1984208

End: 1985335

Strand: Direct

Name: ycdO [H]

Synonym: KP1_2036

Alternate gene names: 238894085

Gene position: 1984208-1985335 (Clockwise)

Preceding gene: 238894084

Following gene: 238894086

Centisome position: 37.81

GC content: 57.36

Gene sequence:

>1128_bases
ATGATGATTCATTTTCGCCGTAATGCGCTGCGGGTGACCGTGGCCGCGCTGCTCAGCTCTGCATTCGGTGCTCAGGCTGC
GGATATCCCGCAGGTCAAAGTCACCGTCAACGACAAGCAGTGCGAGCCGATGCAGGTGACCGTTAACGCGGGTAAAACCC
AGTTTATTATTCAGAACCACAGCCAGAAAGCGCTGGAGTGGGAGATTCTGAAAGGGGTGATGGTGGTGGAAGAGCGCGAA
AACATCGCGCCGGGCTTTACTCAGAAGCTCACCGCGAACCTGCAGCCGGGCGAATATGACATGACCTGTGGCCTGCTCAC
CAACCCGAAAGGCAAACTGATCGTCACCGGCGCCGCCACCAAAGACGCGGCGAAAGCGGATGCGGTGCTGAGCCTCGGCG
ACGCGATCACCGCCTATAAAGCCTATGTGACGACGGAAACCGCGCAGCTGGTTAGCGGCACCAAAGCCTTTACCGACGCG
GTGAAAGCCGGCGATATCGAAAAAGCGAAAGCGCTGTACGCCCCGACGCGTCAGCATTACGAGCGCATCGAGCCCATTGC
CGAGCTGTTCTCTGACCTTGACGGCAGCATCGACGCCCGCGAAGACGACTTCGAGAAAAAAGCGGAAGATCCGAAATTTA
CCGGTTTCCACCGTCTGGAAAAAGCGCTGTTTGGCGATAACAGCGTCAAGGGGATGGAAAAATATGCCGATCAGCTGAAC
AGCGATGTGCTGGAGCTGCAAAAGCGTATCAGCGAGCTGGCGTTCCCGCCGTCAAAAGTCGTGGGCGGCGCGGCAGGATT
AATTGAGGAAGTCGCGGCCAGCAAGATCAGCGGTGAAGAAGATCGCTACAGCCATACCGATCTGTGGGACTTCCAGGCCA
ACATTGACGGCGCGCAGAAAATTGTCGACCTGCTGCGCCCGCAGCTGCAAAAAGAGAACAGCGCGCTGCTGGCGAAAGTG
GACGCCAACTTTAAGAAAGTGGACAGCATCCTCAGCAAATATCGCACCAAAGACGGTTTCGAAACCTACGATAAGCTGAC
CACCGCCGACCGTAATGCGCTGAAAGGGCCGATCACCACCCTGGCGGAAGATCTGGCTCAGCTGCGCGGGATCCTGGGGC
TGGACTAA

Upstream 100 bases:

>100_bases
GTTTGCCCTGCCGCCGCGGAATAATACCACTGCCTCGCGGGCTGCCTGACCGGGCGCTGCGAGCTTATAAGCGACACTCT
ACTTACCGAAAGGGATGATC

Downstream 100 bases:

>100_bases
GTCGATGGCACAGCAGAAACCCCACGACGTGAACGAGCCGTCACGTCGTCGCTTACTGAAAGGGATCGGCGCGCTTGGCG
GCGCGCTGGCCATCACCGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MMIHFRRNALRVTVAALLSSAFGAQAADIPQVKVTVNDKQCEPMQVTVNAGKTQFIIQNHSQKALEWEILKGVMVVEERE
NIAPGFTQKLTANLQPGEYDMTCGLLTNPKGKLIVTGAATKDAAKADAVLSLGDAITAYKAYVTTETAQLVSGTKAFTDA
VKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEKKAEDPKFTGFHRLEKALFGDNSVKGMEKYADQLN
SDVLELQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANIDGAQKIVDLLRPQLQKENSALLAKV
DANFKKVDSILSKYRTKDGFETYDKLTTADRNALKGPITTLAEDLAQLRGILGLD

Sequences:

>Translated_375_residues
MMIHFRRNALRVTVAALLSSAFGAQAADIPQVKVTVNDKQCEPMQVTVNAGKTQFIIQNHSQKALEWEILKGVMVVEERE
NIAPGFTQKLTANLQPGEYDMTCGLLTNPKGKLIVTGAATKDAAKADAVLSLGDAITAYKAYVTTETAQLVSGTKAFTDA
VKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEKKAEDPKFTGFHRLEKALFGDNSVKGMEKYADQLN
SDVLELQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANIDGAQKIVDLLRPQLQKENSALLAKV
DANFKKVDSILSKYRTKDGFETYDKLTTADRNALKGPITTLAEDLAQLRGILGLD
>Mature_375_residues
MMIHFRRNALRVTVAALLSSAFGAQAADIPQVKVTVNDKQCEPMQVTVNAGKTQFIIQNHSQKALEWEILKGVMVVEERE
NIAPGFTQKLTANLQPGEYDMTCGLLTNPKGKLIVTGAATKDAAKADAVLSLGDAITAYKAYVTTETAQLVSGTKAFTDA
VKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEKKAEDPKFTGFHRLEKALFGDNSVKGMEKYADQLN
SDVLELQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANIDGAQKIVDLLRPQLQKENSALLAKV
DANFKKVDSILSKYRTKDGFETYDKLTTADRNALKGPITTLAEDLAQLRGILGLD

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=375, Percent_Identity=86.6666666666667, Blast_Score=682, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 41042; Mature: 41042

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIHFRRNALRVTVAALLSSAFGAQAADIPQVKVTVNDKQCEPMQVTVNAGKTQFIIQNH
CEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECC
SQKALEWEILKGVMVVEERENIAPGFTQKLTANLQPGEYDMTCGLLTNPKGKLIVTGAAT
CCHHHHHHHHHHHHEEECCCCCCCCCHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCC
KDAAKADAVLSLGDAITAYKAYVTTETAQLVSGTKAFTDAVKAGDIEKAKALYAPTRQHY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHCCHHHHH
ERIEPIAELFSDLDGSIDAREDDFEKKAEDPKFTGFHRLEKALFGDNSVKGMEKYADQLN
HHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHC
SDVLELQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANIDGAQK
HHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHH
IVDLLRPQLQKENSALLAKVDANFKKVDSILSKYRTKDGFETYDKLTTADRNALKGPITT
HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCHHHH
LAEDLAQLRGILGLD
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MMIHFRRNALRVTVAALLSSAFGAQAADIPQVKVTVNDKQCEPMQVTVNAGKTQFIIQNH
CEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECC
SQKALEWEILKGVMVVEERENIAPGFTQKLTANLQPGEYDMTCGLLTNPKGKLIVTGAAT
CCHHHHHHHHHHHHEEECCCCCCCCCHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCC
KDAAKADAVLSLGDAITAYKAYVTTETAQLVSGTKAFTDAVKAGDIEKAKALYAPTRQHY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHCCHHHHH
ERIEPIAELFSDLDGSIDAREDDFEKKAEDPKFTGFHRLEKALFGDNSVKGMEKYADQLN
HHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHC
SDVLELQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANIDGAQK
HHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHH
IVDLLRPQLQKENSALLAKVDANFKKVDSILSKYRTKDGFETYDKLTTADRNALKGPITT
HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCHHHH
LAEDLAQLRGILGLD
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]