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The map label for this gene is yijO [H]

Identifier: 238894038

GI number: 238894038

Start: 1936780

End: 1937613

Strand: Reverse

Name: yijO [H]

Synonym: KP1_1984

Alternate gene names: 238894038

Gene position: 1937613-1936780 (Counterclockwise)

Preceding gene: 238894041

Following gene: 238894033

Centisome position: 36.92

GC content: 56.24

Gene sequence:

>834_bases
ATGATTGAAGATCTGCCGGATATACTGCATCGGTTAATCGGTCAAAAAGATCACCTACAGGTGAGATTTCCTGAGCCGGA
TATCTCCGTGCCTGCCCTCGCCTTCAACGTGCCGTTTCCGCGTCTGGAAATTGTGCTGGAGGGCCAACTGAATGAACAGG
GACTGCCGCTGGCCGCCTCGACGTTAACCACGCTGCAGGTACTGTACGTGCAGGCGGGGAAGTGGACGCTGCCGCAGTGG
ACCGGCCCGGCCACTACCCTGAGCATTCTGTTTGGTCGGCAGAAACTGGGATTCAGTATTCAGCGCTGGGACGGAAAAAG
CCTGCACACGGAAAAACAGAGCGTTTCCCGGCTTGGGCCGCGCGTGGGTTCCTACCTGTTGCTGAGCCTGAATGAAGTCA
GCCTGCAGCCCGATCCGCTGACCGCGCGACTGGTGGTTGCCGCGCTGCTGAGTCATTGTCGTGAACAGCTGGTCGGGCTG
GAGATGCGCGTCAGCCGCAGCCGGGATCTGTTTCTCGCCGTCCAGGACTACCTTGAGGAAAATCTCAGTCTACCGCTGAC
GCGGGAATCGGTAGCCAAACGTTTTCACATCACGCCCAACTATCTTTCGCATATTTTTCAGAAATCAGGCTCGGTGGGAT
TTAATGAATATCTGACCCGTGTCCGTCTGGAAAAGGCGAAGCAGCTACTGCGCGGCTATGACCTGAAGGTGAAAGAGATT
GCGCACAATTGCGGCTTTGTCGACAGCAACTATTTTTGCCGGGTTTTTAAACGCTACACAGAACGCTCGCCATCGGAGTA
TCGGCGACACTGCCGTAGCGCGCAGCAGGCCTAA

Upstream 100 bases:

>100_bases
CTGGCCGGCAATCCGCTGCGCAAAATGGCTAAACTAACGCTGCCGGGAAGGAAAAAATAGATTACCATCAACAGGATAAT
GCGCATGCTGAGGGCAAAGA

Downstream 100 bases:

>100_bases
CCTGCCGCACCGGTAGATGGCGCCCACTCCACACGGCCGCGGCCGTTGTGCTTGGCCTTGTACAGCGCCTCGTCGACTTT
ACGGATAAACGTCTCCTGCG

Product: putative AraC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MIEDLPDILHRLIGQKDHLQVRFPEPDISVPALAFNVPFPRLEIVLEGQLNEQGLPLAASTLTTLQVLYVQAGKWTLPQW
TGPATTLSILFGRQKLGFSIQRWDGKSLHTEKQSVSRLGPRVGSYLLLSLNEVSLQPDPLTARLVVAALLSHCREQLVGL
EMRVSRSRDLFLAVQDYLEENLSLPLTRESVAKRFHITPNYLSHIFQKSGSVGFNEYLTRVRLEKAKQLLRGYDLKVKEI
AHNCGFVDSNYFCRVFKRYTERSPSEYRRHCRSAQQA

Sequences:

>Translated_277_residues
MIEDLPDILHRLIGQKDHLQVRFPEPDISVPALAFNVPFPRLEIVLEGQLNEQGLPLAASTLTTLQVLYVQAGKWTLPQW
TGPATTLSILFGRQKLGFSIQRWDGKSLHTEKQSVSRLGPRVGSYLLLSLNEVSLQPDPLTARLVVAALLSHCREQLVGL
EMRVSRSRDLFLAVQDYLEENLSLPLTRESVAKRFHITPNYLSHIFQKSGSVGFNEYLTRVRLEKAKQLLRGYDLKVKEI
AHNCGFVDSNYFCRVFKRYTERSPSEYRRHCRSAQQA
>Mature_277_residues
MIEDLPDILHRLIGQKDHLQVRFPEPDISVPALAFNVPFPRLEIVLEGQLNEQGLPLAASTLTTLQVLYVQAGKWTLPQW
TGPATTLSILFGRQKLGFSIQRWDGKSLHTEKQSVSRLGPRVGSYLLLSLNEVSLQPDPLTARLVVAALLSHCREQLVGL
EMRVSRSRDLFLAVQDYLEENLSLPLTRESVAKRFHITPNYLSHIFQKSGSVGFNEYLTRVRLEKAKQLLRGYDLKVKEI
AHNCGFVDSNYFCRVFKRYTERSPSEYRRHCRSAQQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=276, Percent_Identity=57.2463768115942, Blast_Score=303, Evalue=1e-83,
Organism=Escherichia coli, GI1788725, Length=255, Percent_Identity=35.2941176470588, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1790339, Length=111, Percent_Identity=34.2342342342342, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31627; Mature: 31627

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEDLPDILHRLIGQKDHLQVRFPEPDISVPALAFNVPFPRLEIVLEGQLNEQGLPLAAS
CCCCHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCHHHH
TLTTLQVLYVQAGKWTLPQWTGPATTLSILFGRQKLGFSIQRWDGKSLHTEKQSVSRLGP
HHHHHHHHHEECCCEECCCCCCCHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHH
RVGSYLLLSLNEVSLQPDPLTARLVVAALLSHCREQLVGLEMRVSRSRDLFLAVQDYLEE
HHHHEEEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHC
NLSLPLTRESVAKRFHITPNYLSHIFQKSGSVGFNEYLTRVRLEKAKQLLRGYDLKVKEI
CCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
AHNCGFVDSNYFCRVFKRYTERSPSEYRRHCRSAQQA
HHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MIEDLPDILHRLIGQKDHLQVRFPEPDISVPALAFNVPFPRLEIVLEGQLNEQGLPLAAS
CCCCHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCHHHH
TLTTLQVLYVQAGKWTLPQWTGPATTLSILFGRQKLGFSIQRWDGKSLHTEKQSVSRLGP
HHHHHHHHHEECCCEECCCCCCCHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHH
RVGSYLLLSLNEVSLQPDPLTARLVVAALLSHCREQLVGLEMRVSRSRDLFLAVQDYLEE
HHHHEEEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHC
NLSLPLTRESVAKRFHITPNYLSHIFQKSGSVGFNEYLTRVRLEKAKQLLRGYDLKVKEI
CCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
AHNCGFVDSNYFCRVFKRYTERSPSEYRRHCRSAQQA
HHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]