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The map label for this gene is ymbA [H]

Identifier: 238894008

GI number: 238894008

Start: 1907293

End: 1907856

Strand: Direct

Name: ymbA [H]

Synonym: KP1_1953

Alternate gene names: 238894008

Gene position: 1907293-1907856 (Clockwise)

Preceding gene: 238894007

Following gene: 238894011

Centisome position: 36.34

GC content: 59.22

Gene sequence:

>564_bases
ATGAAAAAATGGTTACTGGCGGCAGCCGTATGCGTACTGACGGCGTGCAGTAGCGGCGGGGAAAGCAAGACATACTATCA
GCTACCGGTTGTGCAGGGCGGCGCGCAGAGCGCCGCCAGTCAGGGGGCACGTCTGCTGTGGGTAGAGCAGGTCAGCATCC
CGGATTATCTGGCGGGTAACGGGGTGGTCTATCAGACCACCGACGTGCAGTATGTGATCGCCAATAATAATCTGTGGGCC
AGTCCGCTGGATCAGCAGCTGCGCACTACGCTGGTGGCAAATCTCAGCCAGCAGTTGCCCGGCTGGGTAGTGTCGTCCCA
GCCGCTGGGGAGCGAGCAGGATACCCTCAACGTTGCGGTCAATGGCTTTCATGGTCGCTATGACGGGCGGGTTATCGTTA
GCGGTGAGTGGCTGCTGAAGCATCAGGGACAGCTGATTAAGCGCCCGTTTAACATCGTCCTCAGGCAGGAACAGGATGGT
TATGACGCGATGGTCAAGACCCTGGCGCAGGCGTGGAGCCAGGAGGCGGCTGCCATTGCCAGCGAGCTTAATCGTCTGCC
ATAA

Upstream 100 bases:

>100_bases
GTGAGCTGCAGCCGGTTCTGAAAACGCTAAATGATAAGAGCAATGCGCTGGTATTTGAGGCGAAGGATAAAAAAGATCCA
CAGCCGAAGGGAGCGAAATA

Downstream 100 bases:

>100_bases
GTAAAATTCATCATAATGATCTGCCGCGCGGTTCACCTGGGCCGCGCGGCATTTTTTTTGCCAGGTCAGTTTGTTACCGG
CGGCTGCGCCGAGCGAACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKKWLLAAAVCVLTACSSGGESKTYYQLPVVQGGAQSAASQGARLLWVEQVSIPDYLAGNGVVYQTTDVQYVIANNNLWA
SPLDQQLRTTLVANLSQQLPGWVVSSQPLGSEQDTLNVAVNGFHGRYDGRVIVSGEWLLKHQGQLIKRPFNIVLRQEQDG
YDAMVKTLAQAWSQEAAAIASELNRLP

Sequences:

>Translated_187_residues
MKKWLLAAAVCVLTACSSGGESKTYYQLPVVQGGAQSAASQGARLLWVEQVSIPDYLAGNGVVYQTTDVQYVIANNNLWA
SPLDQQLRTTLVANLSQQLPGWVVSSQPLGSEQDTLNVAVNGFHGRYDGRVIVSGEWLLKHQGQLIKRPFNIVLRQEQDG
YDAMVKTLAQAWSQEAAAIASELNRLP
>Mature_187_residues
MKKWLLAAAVCVLTACSSGGESKTYYQLPVVQGGAQSAASQGARLLWVEQVSIPDYLAGNGVVYQTTDVQYVIANNNLWA
SPLDQQLRTTLVANLSQQLPGWVVSSQPLGSEQDTLNVAVNGFHGRYDGRVIVSGEWLLKHQGQLIKRPFNIVLRQEQDG
YDAMVKTLAQAWSQEAAAIASELNRLP

Specific function: Unknown

COG id: COG3009

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693109, Length=187, Percent_Identity=76.4705882352941, Blast_Score=292, Evalue=1e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005586 [H]

Pfam domain/function: PF03886 DUF330 [H]

EC number: NA

Molecular weight: Translated: 20385; Mature: 20385

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWLLAAAVCVLTACSSGGESKTYYQLPVVQGGAQSAASQGARLLWVEQVSIPDYLAGN
CCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHCCCEEEEEEECCCCCEECCC
GVVYQTTDVQYVIANNNLWASPLDQQLRTTLVANLSQQLPGWVVSSQPLGSEQDTLNVAV
CEEEEECCEEEEEECCCEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEE
NGFHGRYDGRVIVSGEWLLKHQGQLIKRPFNIVLRQEQDGYDAMVKTLAQAWSQEAAAIA
ECCCCCCCCEEEEECCEEECCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
SELNRLP
HHHHCCC
>Mature Secondary Structure
MKKWLLAAAVCVLTACSSGGESKTYYQLPVVQGGAQSAASQGARLLWVEQVSIPDYLAGN
CCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHCCCEEEEEEECCCCCEECCC
GVVYQTTDVQYVIANNNLWASPLDQQLRTTLVANLSQQLPGWVVSSQPLGSEQDTLNVAV
CEEEEECCEEEEEECCCEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEE
NGFHGRYDGRVIVSGEWLLKHQGQLIKRPFNIVLRQEQDGYDAMVKTLAQAWSQEAAAIA
ECCCCCCCCEEEEECCEEECCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
SELNRLP
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]