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The map label for this gene is ycbB [H]

Identifier: 238893981

GI number: 238893981

Start: 1874701

End: 1876491

Strand: Direct

Name: ycbB [H]

Synonym: KP1_1925

Alternate gene names: 238893981

Gene position: 1874701-1876491 (Clockwise)

Preceding gene: 238893980

Following gene: 238893982

Centisome position: 35.72

GC content: 58.12

Gene sequence:

>1791_bases
ATGTTGCTTAAGAAACGATATGGTCGTCCATTGTCAGCGCTCAGTCTGAGCCTGGCAATGGCATTTGCTCCGCTGTTCAA
TGTCCAGGCCGCAGAGCCTGAAGTCGTACCAGGTGATAGCTCCGCTACGCCTGGAGAGCTTTCCGTCGCGCTGTCGCAAA
GCGACGGGCAATCGCCGGCGGTCGCGAAGCTGGCCGGTGAGCAGCCGCTGTCGATGGAAGCCGCGGCGAACAGTCGCGCC
CAGATCGAAGCGCTATTGCCGGCTGGCTACAAACCCGTCTTTATGAATCCGCTGGTCTCGCTATACGCCGCCAGGGATAT
GAAACCGATGTGGGAAAACCGCGAGGCGGTGCAGGCATTCCAGCAGCAGCTGGCGGAGATCGCCATCGCCGGTTTTCAGC
CGCAGTTTACCACCTGGGTCAGTCTGCTGACCGATCCTGCCGTCACCGGTATGGCGCGCGATGTGGTGTTGTCTGATGCC
ATGATGGGCTATCTGCACTTTATCAGCGGCATCCCCACCCAGGGGACCCGCTGGTTATATAGCTCGACACCGTACAAGAT
GGCGACCCCGCCGCTGTCGGTGATTAACCAGTGGCAGCTGGCGCTGGATAATGGCTCCCTGCCGGCGTTTATCGCCGGCC
TGGCGCCGCGTCATCCGCAGTATGAGGCCATGCACCAGTCGCTGCTGGCGCTGGTGGCTGATTCACGTCCATGGCCGCAG
ATGACCGGCAGCGGCTCGCTGCGTCCGGGAGAATGGAGCAATGATATCGGCGCGCTGCGCGAGATCCTCCAGCGTACCGG
GATGCTGGAAAATTCCGCCAATATCGTTCTGCCCGGCGACGTGGTGAGTCCTTCGGCGAAGAAAAAGAGCAAGCCCGCGG
CGCGCGGTGTGTACGATCGCCAGCTGGTGGAGGGCGTTAAGCGCTTTCAGGCCATGCAGGGGCTGGGGGCGGATGGGGTC
ATCGGCCAATCCACCCGTGACTGGCTCAATGTCTCATCGGCGCAGCGCGCTGGCGTGCTGGCGCTGAACATTCAGCGTCT
ACGTCTGCTGCCAGGCAAACTATCGACCGGTATCATGGTGAATATTCCCGCGTTTTCGCTGGTCTATTACCAGGACGGCA
GTCAGGTGCTGGCCTCGCGGGTGATCGTCGGACGTCCGGACCGCAAGACGCCGATGATGAGCAGCGCGCTGAACAACGTA
GTGGTCAATCCGCCGTGGAACGTACCGCCCACCCTGGCGCGCAAAGATATTCTGCCGAAGGTGCGTAATAATCCTGGCTA
TCTGGAGCAGCATGGCTACACCGTGATGCGCGGCTGGAACAGTAAAGAGACCATCGATCCTTACCGGGTTGACTGGTCAA
CCATCACCGAGAACAATTTACCGTTCCGTTTTCAGCAGGCGCCTGGGGCACGTAATTCACTGGGGCGTTACAAGTTTAAT
ATGCCGAGTTCGGATGCTATCTATCTGCACGATACGCCGAACCATAATCTGTTTCAGAAGGATGTCCGTGCGCTCAGTTC
CGGCTGCGTCAGGGTCAATAAAGCCTCGGAGCTGGCCAATATGCTGCTGCAGGACGCGGGCTGGAATGACACGCGCATTT
CCGACGCCCTGAAGCAGGGGGATACGCGCTATGTCAATATTCGGCAAAATATACCGGTGAATTTATATTACTTAACGGCG
TTTGTGGACGCTGATGGACGTACACAATATCGAACAGATATTTACAATTACGATATCACCGCGCGATCCAGCGCACAAAT
TCTGACGAAAGCGGAACAATTAATCAGGTAA

Upstream 100 bases:

>100_bases
CTTCTTTACATTAGGTAAGGCAAAAGCCTTTTCGTCTTTATATACTGTGTTAAAGCCCACGAATTTGTGGGCGGCAATGT
GTGACAACAGGGGGCAAGGG

Downstream 100 bases:

>100_bases
ATGAAGTAGTTCAATGGATTTTGTTGTCCTAGCACTGGGTAAAAAAGGGCGCTGCACCTCTGCAGCGCCCGATTTTCCTG
GGGTGAGGCTGCCTTGACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 596; Mature: 596

Protein sequence:

>596_residues
MLLKKRYGRPLSALSLSLAMAFAPLFNVQAAEPEVVPGDSSATPGELSVALSQSDGQSPAVAKLAGEQPLSMEAAANSRA
QIEALLPAGYKPVFMNPLVSLYAARDMKPMWENREAVQAFQQQLAEIAIAGFQPQFTTWVSLLTDPAVTGMARDVVLSDA
MMGYLHFISGIPTQGTRWLYSSTPYKMATPPLSVINQWQLALDNGSLPAFIAGLAPRHPQYEAMHQSLLALVADSRPWPQ
MTGSGSLRPGEWSNDIGALREILQRTGMLENSANIVLPGDVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLGADGV
IGQSTRDWLNVSSAQRAGVLALNIQRLRLLPGKLSTGIMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSALNNV
VVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFN
MPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKASELANMLLQDAGWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTA
FVDADGRTQYRTDIYNYDITARSSAQILTKAEQLIR

Sequences:

>Translated_596_residues
MLLKKRYGRPLSALSLSLAMAFAPLFNVQAAEPEVVPGDSSATPGELSVALSQSDGQSPAVAKLAGEQPLSMEAAANSRA
QIEALLPAGYKPVFMNPLVSLYAARDMKPMWENREAVQAFQQQLAEIAIAGFQPQFTTWVSLLTDPAVTGMARDVVLSDA
MMGYLHFISGIPTQGTRWLYSSTPYKMATPPLSVINQWQLALDNGSLPAFIAGLAPRHPQYEAMHQSLLALVADSRPWPQ
MTGSGSLRPGEWSNDIGALREILQRTGMLENSANIVLPGDVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLGADGV
IGQSTRDWLNVSSAQRAGVLALNIQRLRLLPGKLSTGIMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSALNNV
VVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFN
MPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKASELANMLLQDAGWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTA
FVDADGRTQYRTDIYNYDITARSSAQILTKAEQLIR
>Mature_596_residues
MLLKKRYGRPLSALSLSLAMAFAPLFNVQAAEPEVVPGDSSATPGELSVALSQSDGQSPAVAKLAGEQPLSMEAAANSRA
QIEALLPAGYKPVFMNPLVSLYAARDMKPMWENREAVQAFQQQLAEIAIAGFQPQFTTWVSLLTDPAVTGMARDVVLSDA
MMGYLHFISGIPTQGTRWLYSSTPYKMATPPLSVINQWQLALDNGSLPAFIAGLAPRHPQYEAMHQSLLALVADSRPWPQ
MTGSGSLRPGEWSNDIGALREILQRTGMLENSANIVLPGDVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLGADGV
IGQSTRDWLNVSSAQRAGVLALNIQRLRLLPGKLSTGIMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSALNNV
VVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFN
MPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKASELANMLLQDAGWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTA
FVDADGRTQYRTDIYNYDITARSSAQILTKAEQLIR

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=619, Percent_Identity=75.4442649434572, Blast_Score=952, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 65576; Mature: 65576

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKKRYGRPLSALSLSLAMAFAPLFNVQAAEPEVVPGDSSATPGELSVALSQSDGQSPA
CCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
VAKLAGEQPLSMEAAANSRAQIEALLPAGYKPVFMNPLVSLYAARDMKPMWENREAVQAF
HHHHCCCCCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHH
QQQLAEIAIAGFQPQFTTWVSLLTDPAVTGMARDVVLSDAMMGYLHFISGIPTQGTRWLY
HHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
SSTPYKMATPPLSVINQWQLALDNGSLPAFIAGLAPRHPQYEAMHQSLLALVADSRPWPQ
CCCCCCCCCCCHHHHCCEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC
MTGSGSLRPGEWSNDIGALREILQRTGMLENSANIVLPGDVVSPSAKKKSKPAARGVYDR
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHCCCCHHCCHHHH
QLVEGVKRFQAMQGLGADGVIGQSTRDWLNVSSAQRAGVLALNIQRLRLLPGKLSTGIMV
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHCCEEEEEHHHHHCCCCCCCCCEEE
NIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPK
ECCCEEEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHCCEEECCCCCCCHHHHHHHCCHH
VRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFN
HCCCCCCCHHCCEEEEECCCCCCCCCCEECCHHEECCCCCCEEEECCCCCCCCCCCEEEC
MPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKASELANMLLQDAGWNDTRISDALKQG
CCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECHHHHHHHHHHHCCCCCCHHHHHHHHCC
DTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIYNYDITARSSAQILTKAEQLIR
CCEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCC
>Mature Secondary Structure
MLLKKRYGRPLSALSLSLAMAFAPLFNVQAAEPEVVPGDSSATPGELSVALSQSDGQSPA
CCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
VAKLAGEQPLSMEAAANSRAQIEALLPAGYKPVFMNPLVSLYAARDMKPMWENREAVQAF
HHHHCCCCCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHH
QQQLAEIAIAGFQPQFTTWVSLLTDPAVTGMARDVVLSDAMMGYLHFISGIPTQGTRWLY
HHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
SSTPYKMATPPLSVINQWQLALDNGSLPAFIAGLAPRHPQYEAMHQSLLALVADSRPWPQ
CCCCCCCCCCCHHHHCCEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC
MTGSGSLRPGEWSNDIGALREILQRTGMLENSANIVLPGDVVSPSAKKKSKPAARGVYDR
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHCCCCHHCCHHHH
QLVEGVKRFQAMQGLGADGVIGQSTRDWLNVSSAQRAGVLALNIQRLRLLPGKLSTGIMV
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHCCEEEEEHHHHHCCCCCCCCCEEE
NIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPK
ECCCEEEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHCCEEECCCCCCCHHHHHHHCCHH
VRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFN
HCCCCCCCHHCCEEEEECCCCCCCCCCEECCHHEECCCCCCEEEECCCCCCCCCCCEEEC
MPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKASELANMLLQDAGWNDTRISDALKQG
CCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECHHHHHHHHHHHCCCCCCHHHHHHHHCC
DTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIYNYDITARSSAQILTKAEQLIR
CCEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]