Click here to switch to the map view.

The map label for this gene is yecS [H]

Identifier: 238893600

GI number: 238893600

Start: 1454809

End: 1455450

Strand: Direct

Name: yecS [H]

Synonym: KP1_1513

Alternate gene names: 238893600

Gene position: 1454809-1455450 (Clockwise)

Preceding gene: 238893599

Following gene: 238893601

Centisome position: 27.72

GC content: 60.9

Gene sequence:

>642_bases
ATGGATGCAATTTCCTGGCAGTTATTAATCGAAGGCGCATGGACGACCCTCTGGATTTCGGCCATCGCTATCGCCTTCGG
GGTGGTGGCTGGCCTGCTGATCGCCCTGGTACGGATGCTGCGCCTGCCGGTGATCGACCAGCTGCTGGTGGTCTATATCA
GTCTGGCCCGCGCGACGCCGCTGGTGACGCTGGTGCTATTTCTGTTCCTTTCCCTGCCCACGATGGGCATTAACCTCGAC
AAGAACGTGGCCGCCATCGTGGCGCTGACGCTTAACACGTCGGCGTTTAACGCTGAGATCTGGCGCAATGCCTTCCGCAC
CTTTCCGCGCGAACAGCGGGAGGCGGCGGAGTCGGTAGGGATGCGCCGCTGGACCTACTTCCGCTACATCATGCTGCCGC
AGATGTGGATCGAGAGCCTGCCGGCGCTGGTCAATGAGATGTCCTTTTTGATCAAAGGTAGCCCGGCGATCGCCGTGATT
GGCGTGGTGGATCTCACCCGGGTCACCAACCGTATATCCTCGGTCACCTACGAGCCGCTGTCGCCGATCCTCGCCGCCGG
CCTGCTGTATGTGGCGATCATCGGCTGTTTGTTGAAGCTGCAGGGTATCGCGGAACGTAAAGCCAGGCGTCTGGCGCGCT
AG

Upstream 100 bases:

>100_bases
CGACCGAGGCGATCACCAGCCCGGAACAGTTTCACAAACTCGCCGGACTGTAATATTCCGCGGCGGGCGACCGCCGCCTG
TTGTTGAGAAGGAGGGCCTC

Downstream 100 bases:

>100_bases
GAACGGGAGGCATTATGAATCAGTGGGGCGTTATCTGGTCGGTTCGCGATAGCTTTATTGCCGGGTTATTCGCGACCCTC
GAACTGTTTATTACCGCCGC

Product: putative binding-protein-dependent transport system inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MDAISWQLLIEGAWTTLWISAIAIAFGVVAGLLIALVRMLRLPVIDQLLVVYISLARATPLVTLVLFLFLSLPTMGINLD
KNVAAIVALTLNTSAFNAEIWRNAFRTFPREQREAAESVGMRRWTYFRYIMLPQMWIESLPALVNEMSFLIKGSPAIAVI
GVVDLTRVTNRISSVTYEPLSPILAAGLLYVAIIGCLLKLQGIAERKARRLAR

Sequences:

>Translated_213_residues
MDAISWQLLIEGAWTTLWISAIAIAFGVVAGLLIALVRMLRLPVIDQLLVVYISLARATPLVTLVLFLFLSLPTMGINLD
KNVAAIVALTLNTSAFNAEIWRNAFRTFPREQREAAESVGMRRWTYFRYIMLPQMWIESLPALVNEMSFLIKGSPAIAVI
GVVDLTRVTNRISSVTYEPLSPILAAGLLYVAIIGCLLKLQGIAERKARRLAR
>Mature_213_residues
MDAISWQLLIEGAWTTLWISAIAIAFGVVAGLLIALVRMLRLPVIDQLLVVYISLARATPLVTLVLFLFLSLPTMGINLD
KNVAAIVALTLNTSAFNAEIWRNAFRTFPREQREAAESVGMRRWTYFRYIMLPQMWIESLPALVNEMSFLIKGSPAIAVI
GVVDLTRVTNRISSVTYEPLSPILAAGLLYVAIIGCLLKLQGIAERKARRLAR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=206, Percent_Identity=35.9223300970874, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1787030, Length=207, Percent_Identity=36.231884057971, Blast_Score=107, Evalue=4e-25,
Organism=Escherichia coli, GI87082239, Length=167, Percent_Identity=32.3353293413174, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788646, Length=195, Percent_Identity=27.1794871794872, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788645, Length=206, Percent_Identity=27.6699029126214, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1786873, Length=193, Percent_Identity=26.9430051813472, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787087, Length=169, Percent_Identity=31.3609467455621, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787086, Length=215, Percent_Identity=23.7209302325581, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786874, Length=204, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23670; Mature: 23670

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAISWQLLIEGAWTTLWISAIAIAFGVVAGLLIALVRMLRLPVIDQLLVVYISLARATP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVTLVLFLFLSLPTMGINLDKNVAAIVALTLNTSAFNAEIWRNAFRTFPREQREAAESVG
HHHHHHHHHHHCCCCCCCCCCCHHHHEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHH
MRRWTYFRYIMLPQMWIESLPALVNEMSFLIKGSPAIAVIGVVDLTRVTNRISSVTYEPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCHHHH
SPILAAGLLYVAIIGCLLKLQGIAERKARRLAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDAISWQLLIEGAWTTLWISAIAIAFGVVAGLLIALVRMLRLPVIDQLLVVYISLARATP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVTLVLFLFLSLPTMGINLDKNVAAIVALTLNTSAFNAEIWRNAFRTFPREQREAAESVG
HHHHHHHHHHHCCCCCCCCCCCHHHHEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHH
MRRWTYFRYIMLPQMWIESLPALVNEMSFLIKGSPAIAVIGVVDLTRVTNRISSVTYEPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCHHHH
SPILAAGLLYVAIIGCLLKLQGIAERKARRLAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]