Click here to switch to the map view.

The map label for this gene is ybdK [C]

Identifier: 238893589

GI number: 238893589

Start: 1441353

End: 1442468

Strand: Reverse

Name: ybdK [C]

Synonym: KP1_1500

Alternate gene names: 238893589

Gene position: 1442468-1441353 (Counterclockwise)

Preceding gene: 238893596

Following gene: 238893588

Centisome position: 27.48

GC content: 62.28

Gene sequence:

>1116_bases
ATGCCTTTAGCCGATTTTCACCGCTCCGATCCTTTTACCCTCGGTATCGAACTGGAGCTGCAGGTGGTGAACCCGCCGGG
TTACGATCTCAGCCAGGATGCCTCGACGCTGATTGCCGACGTCCAGCATGAGCTGACCGTGGGAGAAGCCAAACACGACA
TCACCGAGAGCATGCTGGAGATCGCCACCGGGGTGTGCCGCGACATCAGCCATGCGCAAATCCAGCTCAGCGCCATCCAG
CAGGCGGTCCAGCGCGCGGCGCTGCGCCATCATCTGCAGATCTGCGGCGGCGGTTCCCACCCCTTTCATGCCTGGCAGCG
CCAGCAAATCAGCGATAACCCGCGCTATGTCAAAACCGTCGAGCATTTTGGCTATCTGGCGCAGCAGGCGACGGTCTTTG
GCCAGCATGTGCACGTCGGCTGCCAGAGCGGCGACGACGCCATCTATCTGCTACATGGCCTGTCGCGCTTTGTACCGCAC
TTCATCGCCCTTAACGCCGCCTCGCCGTGGTTCGACAGCACCGACAGCCGCTTCGCCTGTTCGCGCCTGAACCGCTTCTC
CTCCTATCCCGACAACGGTCCGATGCCGTGGGTGGCCGACTGGCAGGGGTTTCGTCGCCTGTTCCGCCAGCTGAGCTACA
CCAGCATGATCGATAGCATGAAGGATCTGCACTGGGATATTCGCCCCAGCCCGCAGTTTGGTACCGTCGAGGTGCGGGTG
ATGGACACCCCCTTGACCCTTGCCCAGGCGATCCACATCGCCGGCTTTATTCAGACCCTGGCCTGCTGGCTGTTGACGGA
GCGTCCTTTTAAGCACCAGCCTGATGATTATCTGCTGTACCCCTTTAACCGCTATCAGGCCTGCCGCTACGGGCTGGACG
GGACCCTCACCGACGTGCGCAGCGGAGAGCAGCGCAGCATCCGCCAGGAGATCCTGCAGCTCGCCGACCGGCTGGCCCCT
TTCGCCCATCAGCTGAAGGCGACGGCAGCGCTGGAGGCGGTGGTTCGCCAGGCGAAATCGCCGCACAGCGAGGCGCAGCA
GATGCGCGACTTTATCGCCAACGGCGGTTCGCTTTCCGGGCTGGTGCAAAAACACTGTGAGATTTGGGCGGCATAA

Upstream 100 bases:

>100_bases
TGCGTCACTTTTTATTCATCCCCCGTCCACCGCCGCCGCGTATTCTCCGTCGGGATCAATCCCTTCTATACTTCAGGGAA
CACATCGACCGGGAGAGACT

Downstream 100 bases:

>100_bases
GGCAGCGAGGCGGGTATACTCGGCGCAGACTATAGAAAGGACTGCCCATGTTATTACGTTGCCTGCTCCCTCTGGCGCTG
CTGCCCCTGGCCGCCGTCGC

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MPLADFHRSDPFTLGIELELQVVNPPGYDLSQDASTLIADVQHELTVGEAKHDITESMLEIATGVCRDISHAQIQLSAIQ
QAVQRAALRHHLQICGGGSHPFHAWQRQQISDNPRYVKTVEHFGYLAQQATVFGQHVHVGCQSGDDAIYLLHGLSRFVPH
FIALNAASPWFDSTDSRFACSRLNRFSSYPDNGPMPWVADWQGFRRLFRQLSYTSMIDSMKDLHWDIRPSPQFGTVEVRV
MDTPLTLAQAIHIAGFIQTLACWLLTERPFKHQPDDYLLYPFNRYQACRYGLDGTLTDVRSGEQRSIRQEILQLADRLAP
FAHQLKATAALEAVVRQAKSPHSEAQQMRDFIANGGSLSGLVQKHCEIWAA

Sequences:

>Translated_371_residues
MPLADFHRSDPFTLGIELELQVVNPPGYDLSQDASTLIADVQHELTVGEAKHDITESMLEIATGVCRDISHAQIQLSAIQ
QAVQRAALRHHLQICGGGSHPFHAWQRQQISDNPRYVKTVEHFGYLAQQATVFGQHVHVGCQSGDDAIYLLHGLSRFVPH
FIALNAASPWFDSTDSRFACSRLNRFSSYPDNGPMPWVADWQGFRRLFRQLSYTSMIDSMKDLHWDIRPSPQFGTVEVRV
MDTPLTLAQAIHIAGFIQTLACWLLTERPFKHQPDDYLLYPFNRYQACRYGLDGTLTDVRSGEQRSIRQEILQLADRLAP
FAHQLKATAALEAVVRQAKSPHSEAQQMRDFIANGGSLSGLVQKHCEIWAA
>Mature_370_residues
PLADFHRSDPFTLGIELELQVVNPPGYDLSQDASTLIADVQHELTVGEAKHDITESMLEIATGVCRDISHAQIQLSAIQQ
AVQRAALRHHLQICGGGSHPFHAWQRQQISDNPRYVKTVEHFGYLAQQATVFGQHVHVGCQSGDDAIYLLHGLSRFVPHF
IALNAASPWFDSTDSRFACSRLNRFSSYPDNGPMPWVADWQGFRRLFRQLSYTSMIDSMKDLHWDIRPSPQFGTVEVRVM
DTPLTLAQAIHIAGFIQTLACWLLTERPFKHQPDDYLLYPFNRYQACRYGLDGTLTDVRSGEQRSIRQEILQLADRLAPF
AHQLKATAALEAVVRQAKSPHSEAQQMRDFIANGGSLSGLVQKHCEIWAA

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=371, Percent_Identity=69.2722371967655, Blast_Score=556, Evalue=1e-160,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 41797; Mature: 41666

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLADFHRSDPFTLGIELELQVVNPPGYDLSQDASTLIADVQHELTVGEAKHDITESMLE
CCCCCCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IATGVCRDISHAQIQLSAIQQAVQRAALRHHLQICGGGSHPFHAWQRQQISDNPRYVKTV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHH
EHFGYLAQQATVFGQHVHVGCQSGDDAIYLLHGLSRFVPHFIALNAASPWFDSTDSRFAC
HHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
SRLNRFSSYPDNGPMPWVADWQGFRRLFRQLSYTSMIDSMKDLHWDIRPSPQFGTVEVRV
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
MDTPLTLAQAIHIAGFIQTLACWLLTERPFKHQPDDYLLYPFNRYQACRYGLDGTLTDVR
ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHC
SGEQRSIRQEILQLADRLAPFAHQLKATAALEAVVRQAKSPHSEAQQMRDFIANGGSLSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH
LVQKHCEIWAA
HHHHHHHHCCC
>Mature Secondary Structure 
PLADFHRSDPFTLGIELELQVVNPPGYDLSQDASTLIADVQHELTVGEAKHDITESMLE
CCCCCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IATGVCRDISHAQIQLSAIQQAVQRAALRHHLQICGGGSHPFHAWQRQQISDNPRYVKTV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHH
EHFGYLAQQATVFGQHVHVGCQSGDDAIYLLHGLSRFVPHFIALNAASPWFDSTDSRFAC
HHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
SRLNRFSSYPDNGPMPWVADWQGFRRLFRQLSYTSMIDSMKDLHWDIRPSPQFGTVEVRV
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
MDTPLTLAQAIHIAGFIQTLACWLLTERPFKHQPDDYLLYPFNRYQACRYGLDGTLTDVR
ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHC
SGEQRSIRQEILQLADRLAPFAHQLKATAALEAVVRQAKSPHSEAQQMRDFIANGGSLSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH
LVQKHCEIWAA
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA