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The map label for this gene is ybdG [H]

Identifier: 238893567

GI number: 238893567

Start: 1415929

End: 1417227

Strand: Reverse

Name: ybdG [H]

Synonym: KP1_1475

Alternate gene names: 238893567

Gene position: 1417227-1415929 (Counterclockwise)

Preceding gene: 238893568

Following gene: 238893565

Centisome position: 27.0

GC content: 55.5

Gene sequence:

>1299_bases
TTGCATAATAGCTATCCAGCGGTCATCATACCCGCTGGATATTCAGGAGACGTTATGCAGGAATTAATATCGCAAATTGC
CGCCTTAGGAATCGAAATAACCCCCACCCGCTCGCTGATGATTATCTTCGGCATTATCTTGTTCACCGCCGTGGTCGTGC
ATCTGATATTGCACAAAGTGGTCCTGCGCGCATTTGAAAAACGGGCGCTGGCCAGCAGCCATCTGTGGCTGCAAATCATC
ACGCAGAATAAGCTCTTTCACCGACTGGCCTTTACCCTGCAGGGGATCATCGTCAACGTCCAGGCGGTGCTGTGGCTGCA
AAAAGGCAGCGAGGCCGCGGAAATATTAACCACCGTGGCCCAGCTATGGGTGATGATATATGCCATGCTGTCCTTCTTCT
CGCTGCTGGATGTCATTTTAAAGCTGGCGCAGAAATTTCCCGCCGCCTCACAGTTGCCGCTGAAGGGCATATTCCAGGGA
ATTAAGCTGGTGACGGCGATTATTATCGGTATTCTGATTATTTCGCTACTGATAGGTCAGTCACCGGCGATCCTGATTAG
CGGGCTCGGCGCCATGGCCGCGGTGCTGATGCTGGTGTTTAAAGATCCGATCCTCGGTCTGGTGGCCGGTATCCAGCTCT
CTGCCAACGATATGCTCAAGCTTGGCGACTGGCTGGAGATGCCGAAGTACGGCGCCGACGGCGCGGTGATCGATATCGGC
CTCACCACGGTCAAGGTGCGCAACTGGGACAATACCATCACCACCATTCCGACCTGGTCGCTGGTCTCTGACTCGTTTAA
AAACTGGAGCGGCATGTCGGCCTCCGGCGGCCGCCGCATCAAACGCAGCCTTAACATCGACACCACCAGCATTCATTTCC
TCGATGAACAGGAGCAGCAGCGCCTGATCCGGGCGAAGTTACTTAAACCCTATATGGATTCACGCCACGAAGAGATAAGC
GCCTGGAACCAGCAGTACGCCGGGGAGCAATCGATCCTCAACGAGCGGCGGATGACCAACGTCGGCACCTTCCGCGCCTA
TCTGCAGGAGTATTTACGCCATCATCCGCGCATCCGCCAGGATATGACCCTGATGGTGCGCCAGCTGGCGCCGGATGCCA
ACGGCTTGCCGATCGAGATCTACTGCTTCACCAACACCGTGGTATGGGCGGAATATGAGGGGATCCAGGCGGATATTTTC
GACCATGTCTTCGCTGTGGTGGATGAGTTTGGCTTACGCATTCATCAAACGCCCACCGGCAACGATATTCGCGCGCTGAC
CGGCGCCTTCTCCCGCTGA

Upstream 100 bases:

>100_bases
GTGGCCATGATGCTGTTGCTGGGGGCGATAGCGCTGTGGCTACGCCATCATCTCAACCGACAGCCGGCGACGGTGGCCTC
GTAATACCGGCGGCGGTAAT

Downstream 100 bases:

>100_bases
TCCTCAGACGCTGGCGCGGTCTATCACGCGCCAGTCCATCATCACCCGTTCGACGGCAGCGTCGGGATCGTCGATGCGTT
TCATCAGTAGAGACACCGCC

Product: putative transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MHNSYPAVIIPAGYSGDVMQELISQIAALGIEITPTRSLMIIFGIILFTAVVVHLILHKVVLRAFEKRALASSHLWLQII
TQNKLFHRLAFTLQGIIVNVQAVLWLQKGSEAAEILTTVAQLWVMIYAMLSFFSLLDVILKLAQKFPAASQLPLKGIFQG
IKLVTAIIIGILIISLLIGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIG
LTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSLNIDTTSIHFLDEQEQQRLIRAKLLKPYMDSRHEEIS
AWNQQYAGEQSILNERRMTNVGTFRAYLQEYLRHHPRIRQDMTLMVRQLAPDANGLPIEIYCFTNTVVWAEYEGIQADIF
DHVFAVVDEFGLRIHQTPTGNDIRALTGAFSR

Sequences:

>Translated_432_residues
MHNSYPAVIIPAGYSGDVMQELISQIAALGIEITPTRSLMIIFGIILFTAVVVHLILHKVVLRAFEKRALASSHLWLQII
TQNKLFHRLAFTLQGIIVNVQAVLWLQKGSEAAEILTTVAQLWVMIYAMLSFFSLLDVILKLAQKFPAASQLPLKGIFQG
IKLVTAIIIGILIISLLIGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIG
LTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSLNIDTTSIHFLDEQEQQRLIRAKLLKPYMDSRHEEIS
AWNQQYAGEQSILNERRMTNVGTFRAYLQEYLRHHPRIRQDMTLMVRQLAPDANGLPIEIYCFTNTVVWAEYEGIQADIF
DHVFAVVDEFGLRIHQTPTGNDIRALTGAFSR
>Mature_432_residues
MHNSYPAVIIPAGYSGDVMQELISQIAALGIEITPTRSLMIIFGIILFTAVVVHLILHKVVLRAFEKRALASSHLWLQII
TQNKLFHRLAFTLQGIIVNVQAVLWLQKGSEAAEILTTVAQLWVMIYAMLSFFSLLDVILKLAQKFPAASQLPLKGIFQG
IKLVTAIIIGILIISLLIGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIG
LTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSLNIDTTSIHFLDEQEQQRLIRAKLLKPYMDSRHEEIS
AWNQQYAGEQSILNERRMTNVGTFRAYLQEYLRHHPRIRQDMTLMVRQLAPDANGLPIEIYCFTNTVVWAEYEGIQADIF
DHVFAVVDEFGLRIHQTPTGNDIRALTGAFSR

Specific function: Mechanosensitive channel of miniconductance that confers protection against mild hypoosmotic shock. Overexpression confers protection against severe shocks [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1786791, Length=415, Percent_Identity=82.1686746987952, Blast_Score=704, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 48247; Mature: 48247

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNSYPAVIIPAGYSGDVMQELISQIAALGIEITPTRSLMIIFGIILFTAVVVHLILHKV
CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHH
VLRAFEKRALASSHLWLQIITQNKLFHRLAFTLQGIIVNVQAVLWLQKGSEAAEILTTVA
HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHH
QLWVMIYAMLSFFSLLDVILKLAQKFPAASQLPLKGIFQGIKLVTAIIIGILIISLLIGQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
SPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIG
CCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCEECCCHHHHHHHHHHCCCCCCCCCEEEEC
LTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSLNIDTTSIHFLDEQEQQ
EEEEEEECCCCCEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCEEEEECCCHHHH
RLIRAKLLKPYMDSRHEEISAWNQQYAGEQSILNERRMTNVGTFRAYLQEYLRHHPRIRQ
HHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
DMTLMVRQLAPDANGLPIEIYCFTNTVVWAEYEGIQADIFDHVFAVVDEFGLRIHQTPTG
HHHHHHHHHCCCCCCCCEEEEEEECEEEEEECCCCHHHHHHHHHHHHHHHCCEEECCCCC
NDIRALTGAFSR
CCHHHHHCCCCC
>Mature Secondary Structure
MHNSYPAVIIPAGYSGDVMQELISQIAALGIEITPTRSLMIIFGIILFTAVVVHLILHKV
CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHH
VLRAFEKRALASSHLWLQIITQNKLFHRLAFTLQGIIVNVQAVLWLQKGSEAAEILTTVA
HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHH
QLWVMIYAMLSFFSLLDVILKLAQKFPAASQLPLKGIFQGIKLVTAIIIGILIISLLIGQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
SPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIG
CCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCEECCCHHHHHHHHHHCCCCCCCCCEEEEC
LTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSLNIDTTSIHFLDEQEQQ
EEEEEEECCCCCEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCEEEEECCCHHHH
RLIRAKLLKPYMDSRHEEISAWNQQYAGEQSILNERRMTNVGTFRAYLQEYLRHHPRIRQ
HHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
DMTLMVRQLAPDANGLPIEIYCFTNTVVWAEYEGIQADIFDHVFAVVDEFGLRIHQTPTG
HHHHHHHHHCCCCCCCCEEEEEEECEEEEEECCCCHHHHHHHHHHHHHHHCCEEECCCCC
NDIRALTGAFSR
CCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7813889 [H]