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The map label for this gene is yhdY [H]

Identifier: 238893278

GI number: 238893278

Start: 1120724

End: 1121413

Strand: Reverse

Name: yhdY [H]

Synonym: KP1_1151

Alternate gene names: 238893278

Gene position: 1121413-1120724 (Counterclockwise)

Preceding gene: 238893279

Following gene: 238893271

Centisome position: 21.37

GC content: 66.81

Gene sequence:

>690_bases
ATGAACGCTAATCTGGCGGTGATCGCCGATAACCTCGATTACCTGCTGTGGGGCCGACTGGCGGAGGGCCAGCCCGGCGG
CGTGGCGCTGACCCTGCTGATGGCCATCGGCGCCACCCTGCTGGCGCTGCCGGGAGGCATTGCGCTGGCGGGCCTGGCCT
GGCGCTACGGCGGGCTGGTGCGGCGTCTGCTGTTTCTGTGGGCGGAAATTATCCGCGGCATCCCGCTGATATTTGTCATC
TTCTGGCTGTGGTATCTGCTGCCGATGCTGACCGGCGGCGATCTGCCCGGCGCGGTGACCGTGACCCTGGCGCTGGCGTG
GTTTACCGCCGCCTCGGTGATGCACTCGGTGCTGGCCGGGCTGCAGTCGCTGCCGAAAGGACAGTATGAGGCGGCGCTGA
CCCAGGGGTTCGCTCCCGGGCAAACGCTGCGCCTGGTGCTGCTCCCGCAGGCGCTGCGCAACGTTCAGCCGTCGCTGGTG
GGGATCTTTATCGGCCTGCTGAAAGACACGTCGCTGGCGTTCATCGTCAACGTCCCGGAGCTGACCACCGTGGCCGGCCA
GGTCAACAACCGGGTGCAGATCTATCCCCTGGCGATCTTCGTCTTCACCGGCGCGGTGTACTACCTGCTGTGCTGCGGTC
TGAGCCTGCTGGCCAGCCGGCGCTTTACCCGCCGCGCGACCACCAGATAA

Upstream 100 bases:

>100_bases
TTTGCCGTCGGCACCGCGCTGTACCTGGCGCTGGGGGCGGCGATGGGCGTGGCGCTCACGCGTCTCGGCCCGGGAAGAAA
ACTGCAACGGAGCGCCCGAC

Downstream 100 bases:

>100_bases
GGCTCACTCCGCGGGACGGGGCTTCAGCGGACAGGTATCGCTGATCTTAATAAATTTGTCGTTATAGACCAGATAGTGGT
TCCCCGGCTGGCGCAGCGCC

Product: glutamate/aspartate transport system permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MNANLAVIADNLDYLLWGRLAEGQPGGVALTLLMAIGATLLALPGGIALAGLAWRYGGLVRRLLFLWAEIIRGIPLIFVI
FWLWYLLPMLTGGDLPGAVTVTLALAWFTAASVMHSVLAGLQSLPKGQYEAALTQGFAPGQTLRLVLLPQALRNVQPSLV
GIFIGLLKDTSLAFIVNVPELTTVAGQVNNRVQIYPLAIFVFTGAVYYLLCCGLSLLASRRFTRRATTR

Sequences:

>Translated_229_residues
MNANLAVIADNLDYLLWGRLAEGQPGGVALTLLMAIGATLLALPGGIALAGLAWRYGGLVRRLLFLWAEIIRGIPLIFVI
FWLWYLLPMLTGGDLPGAVTVTLALAWFTAASVMHSVLAGLQSLPKGQYEAALTQGFAPGQTLRLVLLPQALRNVQPSLV
GIFIGLLKDTSLAFIVNVPELTTVAGQVNNRVQIYPLAIFVFTGAVYYLLCCGLSLLASRRFTRRATTR
>Mature_229_residues
MNANLAVIADNLDYLLWGRLAEGQPGGVALTLLMAIGATLLALPGGIALAGLAWRYGGLVRRLLFLWAEIIRGIPLIFVI
FWLWYLLPMLTGGDLPGAVTVTLALAWFTAASVMHSVLAGLQSLPKGQYEAALTQGFAPGQTLRLVLLPQALRNVQPSLV
GIFIGLLKDTSLAFIVNVPELTTVAGQVNNRVQIYPLAIFVFTGAVYYLLCCGLSLLASRRFTRRATTR

Specific function: Part of a binding-protein-dependent transport system for L-amino acids, affects the uptake as well as efflux of these amino acids. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=215, Percent_Identity=35.3488372093023, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788226, Length=220, Percent_Identity=32.7272727272727, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786873, Length=223, Percent_Identity=26.9058295964126, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI48994930, Length=181, Percent_Identity=32.0441988950276, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786874, Length=136, Percent_Identity=34.5588235294118, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787030, Length=203, Percent_Identity=30.5418719211823, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24678; Mature: 24678

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNANLAVIADNLDYLLWGRLAEGQPGGVALTLLMAIGATLLALPGGIALAGLAWRYGGLV
CCCCEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
RRLLFLWAEIIRGIPLIFVIFWLWYLLPMLTGGDLPGAVTVTLALAWFTAASVMHSVLAG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LQSLPKGQYEAALTQGFAPGQTLRLVLLPQALRNVQPSLVGIFIGLLKDTSLAFIVNVPE
HHHCCCCHHHHHHHCCCCCCCHHHHEEEHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCH
LTTVAGQVNNRVQIYPLAIFVFTGAVYYLLCCGLSLLASRRFTRRATTR
HHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNANLAVIADNLDYLLWGRLAEGQPGGVALTLLMAIGATLLALPGGIALAGLAWRYGGLV
CCCCEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
RRLLFLWAEIIRGIPLIFVIFWLWYLLPMLTGGDLPGAVTVTLALAWFTAASVMHSVLAG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LQSLPKGQYEAALTQGFAPGQTLRLVLLPQALRNVQPSLVGIFIGLLKDTSLAFIVNVPE
HHHCCCCHHHHHHHCCCCCCCHHHHEEEHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCH
LTTVAGQVNNRVQIYPLAIFVFTGAVYYLLCCGLSLLASRRFTRRATTR
HHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8898392 [H]