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The map label for this gene is nlpC [H]

Identifier: 238893263

GI number: 238893263

Start: 1106110

End: 1106676

Strand: Reverse

Name: nlpC [H]

Synonym: KP1_1136

Alternate gene names: 238893263

Gene position: 1106676-1106110 (Counterclockwise)

Preceding gene: 238893266

Following gene: 238893261

Centisome position: 21.09

GC content: 55.38

Gene sequence:

>567_bases
ATGAAGCCAAAACTGACGCATGCTCTCTTTTTAATTCCTTTTTTGTTGTTGGCAGGATGCTCCTCCTCACCGAAACAGGC
AAAGAACACAAAATCTCATGCGGATATGACCATTGATAGCGGATCGGACGATCTGATCCCTGTGGTGGCGGCCCTGCATG
ATCAGATGCACACCTGGCAGGGAACCCCCTATGAATGGGGCGGTACTGAACAAAGCGGCGTCGACTGCTCGGGTTTCGTC
TGGCGCACGCTGAAGGATCGCTTTAACCTGCCAATGGAGCGGATCACCACCCGCGAGCTGCTGCACATGGGCGTGCGGGT
CAATAAGCGGGATTTACGTCCCGGCGATCTGGTGTTCTTCCGCACCCGGGCCGGGATGCACGTTGGCTTTTACGATACCG
ATCATAATTTCCTTCACGCCTCGAGCAGCCAGGGCGTGATGCGCTCTTCGCTGGACAACCCTTACTGGGAATCAGCGTTC
TATCAGGCGCGTCGTCTGCCGAAGGAGTATAACGCGCAGATCACCATGAACAGCGACACCCTGCATTTGGCGAAGAATCG
CCGCTAA

Upstream 100 bases:

>100_bases
TAATCGTAAATAAACGTAAAGGCGGCCTCGGCTTATTCAGCCGTGGTTTTTAATCGGCTATAAAACAAAGCAGTCTGCTT
GCTACTTCGAAAATAACGAT

Downstream 100 bases:

>100_bases
AAAAAAGCCGCAGCCAGGGCTGCGGCGGGTGGTTCTGCGGTTAATCAGAACTGGTAGGTCATACCCAGCGCGACGATGTC
GTCATCGTTGATGCCGAGTT

Product: lipoprotein

Products: NA

Alternate protein names: ORF-17 [H]

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MKPKLTHALFLIPFLLLAGCSSSPKQAKNTKSHADMTIDSGSDDLIPVVAALHDQMHTWQGTPYEWGGTEQSGVDCSGFV
WRTLKDRFNLPMERITTRELLHMGVRVNKRDLRPGDLVFFRTRAGMHVGFYDTDHNFLHASSSQGVMRSSLDNPYWESAF
YQARRLPKEYNAQITMNSDTLHLAKNRR

Sequences:

>Translated_188_residues
MKPKLTHALFLIPFLLLAGCSSSPKQAKNTKSHADMTIDSGSDDLIPVVAALHDQMHTWQGTPYEWGGTEQSGVDCSGFV
WRTLKDRFNLPMERITTRELLHMGVRVNKRDLRPGDLVFFRTRAGMHVGFYDTDHNFLHASSSQGVMRSSLDNPYWESAF
YQARRLPKEYNAQITMNSDTLHLAKNRR
>Mature_188_residues
MKPKLTHALFLIPFLLLAGCSSSPKQAKNTKSHADMTIDSGSDDLIPVVAALHDQMHTWQGTPYEWGGTEQSGVDCSGFV
WRTLKDRFNLPMERITTRELLHMGVRVNKRDLRPGDLVFFRTRAGMHVGFYDTDHNFLHASSSQGVMRSSLDNPYWESAF
YQARRLPKEYNAQITMNSDTLHLAKNRR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788001, Length=126, Percent_Identity=53.968253968254, Blast_Score=147, Evalue=3e-37,
Organism=Escherichia coli, GI1788501, Length=182, Percent_Identity=37.3626373626374, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787944, Length=113, Percent_Identity=35.3982300884956, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786421, Length=135, Percent_Identity=32.5925925925926, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 21455; Mature: 21455

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPKLTHALFLIPFLLLAGCSSSPKQAKNTKSHADMTIDSGSDDLIPVVAALHDQMHTWQ
CCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCC
GTPYEWGGTEQSGVDCSGFVWRTLKDRFNLPMERITTRELLHMGVRVNKRDLRPGDLVFF
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
RTRAGMHVGFYDTDHNFLHASSSQGVMRSSLDNPYWESAFYQARRLPKEYNAQITMNSDT
EECCCCEEEEEECCCCEEECCCCCCHHHHHCCCCHHHHHHHHHHHCCHHHCCEEEECCCE
LHLAKNRR
EEECCCCC
>Mature Secondary Structure
MKPKLTHALFLIPFLLLAGCSSSPKQAKNTKSHADMTIDSGSDDLIPVVAALHDQMHTWQ
CCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCC
GTPYEWGGTEQSGVDCSGFVWRTLKDRFNLPMERITTRELLHMGVRVNKRDLRPGDLVFF
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
RTRAGMHVGFYDTDHNFLHASSSQGVMRSSLDNPYWESAFYQARRLPKEYNAQITMNSDT
EECCCCEEEEEECCCCEEECCCCCCHHHHHCCCCHHHHHHHHHHHCCHHHCCEEEECCCE
LHLAKNRR
EEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]