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The map label for this gene is nqrD [H]

Identifier: 238893219

GI number: 238893219

Start: 1062030

End: 1062668

Strand: Direct

Name: nqrD [H]

Synonym: KP1_1087

Alternate gene names: 238893219

Gene position: 1062030-1062668 (Clockwise)

Preceding gene: 238893218

Following gene: 238893220

Centisome position: 20.23

GC content: 58.53

Gene sequence:

>639_bases
ATGGCTGAACAGAGCGATATGAAAGAGGTGAAGCGCGTGCTGGTGGGGCCGCTCATCGCCAATAACCCCATCGCCCTGCA
GGTGCTGGGTGTCTGCTCCGCACTGGCGGTAACCACCAAACTGGAAACCGCCTTCGTGATGACCATTGCGGTGACCCTGG
TGACGGCGTTCTCCAGCATGTTTATCTCGATGATCCGCCACCATATTCCCAATAGCGTGCGCATCATCGTGCAGATGGCG
ATCATCGCCTCGCTGGTGATCGTGGTGGATCAGCTGCTGCGGGCTTTCGCCTATGAGACCTCCAAACAGCTGTCGGTATT
CGTCGGGCTTATCATCACCAACTGCATCGTGATGGGCCGCGCCGAAGCCTACGCCATGAAGTCGCCGCCGCTGGCGAGCT
TTATGGATGGTATTGGCAACGGTCTCGGCTATGGCGCGATCCTGATTATCGTCGGCTTCCTGCGCGAGCTTATCGGTAGC
GGCAAGCTGTTCGGTATCACGGTGCTGGAAACGGTGCAGAACGGCGGCTGGTATCAGCCGAACGGCCTGTTCCTGCTGGC
GCCGAGCGCGTTCTTCATTATCGGTTTGCTGATCTGGGCCCTGCGTAGCTGGAAGCCTGAGCAGCAGGAAAAGGAGTAA

Upstream 100 bases:

>100_bases
ACGCTGACGTCCAATGGCGTACAGCATAGCTTTGATTTCTGGATGGGCGAACTGGGCTTTGGTCCGTTCCTGAAAAAGGT
TCGTGAGGGAGAGCTGAATA

Downstream 100 bases:

>100_bases
TCGGTGATGGCTCATTACATCAGCCTGTTTGTCCGCGCGGTGTTCGTTGAGAACATGGCGCTGGCCTTCTTCCTCGGGAT
GTGCACCTTTCTTGCGGTGT

Product: Na(+)-translocating NADH-quinone reductase subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D [H]

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMA
IIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGS
GKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE

Sequences:

>Translated_212_residues
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMA
IIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGS
GKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>Mature_211_residues
AEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAI
IASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSG
KLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=204, Percent_Identity=39.7058823529412, Blast_Score=118, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011292 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 23030; Mature: 22899

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSM
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQP
HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCC
NGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
CCEEEECCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSM
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQP
HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCC
NGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
CCEEEECCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]