Click here to switch to the map view.

The map label for this gene is rcsF [H]

Identifier: 238893193

GI number: 238893193

Start: 1031983

End: 1032390

Strand: Reverse

Name: rcsF [H]

Synonym: KP1_1055

Alternate gene names: 238893193

Gene position: 1032390-1031983 (Counterclockwise)

Preceding gene: 238893194

Following gene: 238893192

Centisome position: 19.67

GC content: 57.84

Gene sequence:

>408_bases
ATGCGTGCTTTACCGATCTGTTTGTTAGCACTCATGTTAAGCGGTTGTTCCATGCTAAGCAGATCTCCCGTTGAGCCTGC
TCAAAGCACTGCAACCCCGCCGGTTAAATCTGAGCCGAGCAAACCGCGCGCCACCCGCCCGGCCCCAGTACGTATTTACA
CCGATGCGTCAGAGCTGGTTGGTAAACCGTTCCGCGATCTGGGTGAAGTATCTGGCGAGTCCTGCCAGGCTTCGAATCAG
GATTCTCCGCCGAATATCCCCACCGCGCGCAAGCGCCTGCAAATTAATGCCGCGCGTATGAAAGCCAATGCCGTCCTGCT
TCACCGCTGCGAAGTGACCAGCGGTACGCCAGGCTGCTACCGTCAGGCCGTTTGCCTGGGTTCAGCGCTTAACGTCTCGG
CGCAATGA

Upstream 100 bases:

>100_bases
TCACCGTAATATCATTCAGGACGGGCTTCACGCCCGTCTTGTCATTTATGCAAGCACCTGATTCAATAACGCCCTGTTTT
TTATTCATTGAGGAAATACT

Downstream 100 bases:

>100_bases
GCGCATTTCAGGTCGCGCAAATAGGCGTCATCCGTTCGCCGTATAAAGAGAAGTTTGCCGTTCCTCGCCAGCCAGGCCTG
GTGAAACACGGCGGCGGAGA

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MRALPICLLALMLSGCSMLSRSPVEPAQSTATPPVKSEPSKPRATRPAPVRIYTDASELVGKPFRDLGEVSGESCQASNQ
DSPPNIPTARKRLQINAARMKANAVLLHRCEVTSGTPGCYRQAVCLGSALNVSAQ

Sequences:

>Translated_135_residues
MRALPICLLALMLSGCSMLSRSPVEPAQSTATPPVKSEPSKPRATRPAPVRIYTDASELVGKPFRDLGEVSGESCQASNQ
DSPPNIPTARKRLQINAARMKANAVLLHRCEVTSGTPGCYRQAVCLGSALNVSAQ
>Mature_135_residues
MRALPICLLALMLSGCSMLSRSPVEPAQSTATPPVKSEPSKPRATRPAPVRIYTDASELVGKPFRDLGEVSGESCQASNQ
DSPPNIPTARKRLQINAARMKANAVLLHRCEVTSGTPGCYRQAVCLGSALNVSAQ

Specific function: Essential component of the Rcs signaling system to promote transcription of the genes for colanic acid capsule synthesis. Together with rcsC, they probably promote the phosphorylation of rcsB [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786394, Length=135, Percent_Identity=82.962962962963, Blast_Score=231, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14317; Mature: 14317

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALPICLLALMLSGCSMLSRSPVEPAQSTATPPVKSEPSKPRATRPAPVRIYTDASELV
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHH
GKPFRDLGEVSGESCQASNQDSPPNIPTARKRLQINAARMKANAVLLHRCEVTSGTPGCY
CCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCHHH
RQAVCLGSALNVSAQ
HHHHHHCCCCCCCCC
>Mature Secondary Structure
MRALPICLLALMLSGCSMLSRSPVEPAQSTATPPVKSEPSKPRATRPAPVRIYTDASELV
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHH
GKPFRDLGEVSGESCQASNQDSPPNIPTARKRLQINAARMKANAVLLHRCEVTSGTPGCY
CCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCHHH
RQAVCLGSALNVSAQ
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Stimulates colanic acid capsule synthesis [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]