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The map label for this gene is rarD [H]

Identifier: 238892415

GI number: 238892415

Start: 179170

End: 180063

Strand: Reverse

Name: rarD [H]

Synonym: KP1_0174

Alternate gene names: 238892415

Gene position: 180063-179170 (Counterclockwise)

Preceding gene: 238892416

Following gene: 238892407

Centisome position: 3.43

GC content: 57.49

Gene sequence:

>894_bases
ATGGATGCGAAACAGACGCGGTTGGGGATCATTCTGGCCCTCGCCGCCTACTTTATCTGGGGTATCGCGCCAGCGTACTT
CAAACTTATCTACTATGTTCCCGCCGATGAAATTTTGACCCATCGCGTGATCTGGTCTTTCTTCTTCATGGTGGCGCTCA
TCAGCGTCAGCCGCCAGTGGCCACAGGTGAAAAAGCTGCTGAAAACGCCGCGCAAGATCTTCCTGCTGGCGCTCTCGGCA
GTGCTGGTCGGCGGTAACTGGCTGTTGTTCATCTGGGCGGTGAATAACCACCATATGCTGGAAGCCAGCCTCGGCTACTT
TATCAACCCGCTGGTGAATATTTTGTTGGGGATGATTTTCCTCGGCGAACGCTTTCGTCGTCTGCAGTGGCTGGCGGTGA
TCCTCGCCTTTTGCGGCGTGCTGGTCCAGCTGTGGACCTTTGGTTCGCTGCCGATAATCGGTCTTGGGCTGGCTTTCAGT
TTTGCCTTTTACGGCCTGGTGCGAAAGAAAATTGCTGTCGATGCGCAAACCGGCATGCTGGTGGAAACGCTGTGGCTGCT
GCCGGTGGCGGCAATCTGGTTGTTCGGCATCACCGACAGCCCGACCAGCCATATGGGCGAGAACCCCTGGTCGCTCAATC
TGCTGCTGATGGCCGCGGGCGTGGTGACCACCATCCCTTTGCTGTGCTTTACCGGGGCGGCAACGCGTCTGCGGCTCTCC
ACGCTGGGCTTTTTCCAGTACATCGGCCCAACGCTGATGTTCCTGCTGGCGGTGACGTTCTACGGCGAAGTGCCGGGCAA
GGATAAAATGGTGACCTTTGGCTTTATCTGGGTCGCGCTGGCGGTGTTTATCGTCGATGCGCTGTATACCCAGCGCCGGT
TGCGCAGAGGCTAA

Upstream 100 bases:

>100_bases
CGAAGCTCAGGTCTATATTGCCAGCGCAACGGCCACCTATATGGTGGGTTGATTGGCCAAAATCGAGTAACATCACTCTC
TTTGGCAATGGATTTTACCG

Downstream 100 bases:

>100_bases
GCCTGCATCAGCCAGTAAAGAAGGGAGCCGACGCTCCCTTTTTTTACAGCCAGTTTTTGCGCTTGAAGTAGAGATACGGC
GCCAGGCCGGCCAGCATCAT

Product: chloramphenicol resistance

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDAKQTRLGIILALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVALISVSRQWPQVKKLLKTPRKIFLLALSA
VLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIFLGERFRRLQWLAVILAFCGVLVQLWTFGSLPIIGLGLAFS
FAFYGLVRKKIAVDAQTGMLVETLWLLPVAAIWLFGITDSPTSHMGENPWSLNLLLMAAGVVTTIPLLCFTGAATRLRLS
TLGFFQYIGPTLMFLLAVTFYGEVPGKDKMVTFGFIWVALAVFIVDALYTQRRLRRG

Sequences:

>Translated_297_residues
MDAKQTRLGIILALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVALISVSRQWPQVKKLLKTPRKIFLLALSA
VLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIFLGERFRRLQWLAVILAFCGVLVQLWTFGSLPIIGLGLAFS
FAFYGLVRKKIAVDAQTGMLVETLWLLPVAAIWLFGITDSPTSHMGENPWSLNLLLMAAGVVTTIPLLCFTGAATRLRLS
TLGFFQYIGPTLMFLLAVTFYGEVPGKDKMVTFGFIWVALAVFIVDALYTQRRLRRG
>Mature_297_residues
MDAKQTRLGIILALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVALISVSRQWPQVKKLLKTPRKIFLLALSA
VLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIFLGERFRRLQWLAVILAFCGVLVQLWTFGSLPIIGLGLAFS
FAFYGLVRKKIAVDAQTGMLVETLWLLPVAAIWLFGITDSPTSHMGENPWSLNLLLMAAGVVTTIPLLCFTGAATRLRLS
TLGFFQYIGPTLMFLLAVTFYGEVPGKDKMVTFGFIWVALAVFIVDALYTQRRLRRG

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=296, Percent_Identity=85.1351351351351, Blast_Score=525, Evalue=1e-150,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33432; Mature: 33432

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAKQTRLGIILALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVALISVSRQW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PQVKKLLKTPRKIFLLALSAVLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIF
HHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHH
LGERFRRLQWLAVILAFCGVLVQLWTFGSLPIIGLGLAFSFAFYGLVRKKIAVDAQTGML
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
VETLWLLPVAAIWLFGITDSPTSHMGENPWSLNLLLMAAGVVTTIPLLCFTGAATRLRLS
HHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
TLGFFQYIGPTLMFLLAVTFYGEVPGKDKMVTFGFIWVALAVFIVDALYTQRRLRRG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDAKQTRLGIILALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVALISVSRQW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PQVKKLLKTPRKIFLLALSAVLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIF
HHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHH
LGERFRRLQWLAVILAFCGVLVQLWTFGSLPIIGLGLAFSFAFYGLVRKKIAVDAQTGML
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
VETLWLLPVAAIWLFGITDSPTSHMGENPWSLNLLLMAAGVVTTIPLLCFTGAATRLRLS
HHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
TLGFFQYIGPTLMFLLAVTFYGEVPGKDKMVTFGFIWVALAVFIVDALYTQRRLRRG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503 [H]