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The map label for this gene is yijO [H]

Identifier: 238892351

GI number: 238892351

Start: 102966

End: 103829

Strand: Reverse

Name: yijO [H]

Synonym: KP1_0106

Alternate gene names: 238892351

Gene position: 103829-102966 (Counterclockwise)

Preceding gene: 238892353

Following gene: 238892350

Centisome position: 1.98

GC content: 57.52

Gene sequence:

>864_bases
ATGGACAACGATATCAATCAGCTTATTGATGCATTGCTAAAAAAGCAGACCAGCCTCGGCCGGGTTTATTTCGCCGGCGA
GACGCGCTCGCCTGCTGAGCCGGTGGTGCAGGTGGATTTTCCTCGTCTGAATATCCTCCTCGATGGGCAGTTGCCCGACC
AGGCGCTCGGCGATAACGCCCCTCCCCTCGAAGCCAACGACGTGCTCTATATTCCTGGCGATAGCTGGAACTGCCCGCAG
TGGCAAGCGCCTTGCCTGCTGTTAAGCATCCTGTTCGATAAGCAGCAGCTGGAGTGCTCGCTGCAGCACTGGAATGGCAA
GGCGATAACTGTTGTCGACAAGCGGCAGGCGCTGCGCCGCGGGCCGCGCGTCGGATCATTTCTGCTGCAGGCGCTCAATG
AACTCCGGATGCAACCGCAGGAGCAGCAAACCGCCCGCAGCATCGTCGTCAGCCTGCTCAGCCACTGCCATGATCTTCTC
GGCAGCCAGGCGCAAACCTCCTCGCGCAGCCAGGCGTTGTTCGAAGCGATCCGCCAATATATGGACATCCATTATGCGGA
ACCGCTGAGCCGGGAATCGGTGGCCCAGGCGTTCTACCTCTCTCCCAACTATCTTTCCCATCTGTTCCAGAAATGTGGGC
CAATGGGCTTCAATGAATATCTAAACCATATTCGTCTCGAACAGGCCCGTATGCTGCTGAAGGGCCACGATATGAAAGTG
AAAGACATCGCCCACGCCTGCGGCTTCGCCGACAGCAACTACTTCTGCCGCCTGTTCCGCAAAACTACGGAACGCTCGCC
GTCTGAATACCGCCGCCAGTACCATAGCCAGCTGACGGAAAAAGCATCCCCGGTAAAAAACTAG

Upstream 100 bases:

>100_bases
AACATATCTTATCTGGGAGGCAAGAGCGACAGGCAAGCGCTTTTACCGCTGGAATAATGTCCGGTATGATGAAAAGGGTG
ATGCGCTGAACGGAAGAATG

Downstream 100 bases:

>100_bases
ATTTTTGTGTGTTAAACCTGACTTTTGTGCGCGCTATAGTTACCTCCCATCCCAGCCAGCGCCGATAAATGTGATCTAAA
TCATCCTTAATCACGATGCG

Product: putative AraC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MDNDINQLIDALLKKQTSLGRVYFAGETRSPAEPVVQVDFPRLNILLDGQLPDQALGDNAPPLEANDVLYIPGDSWNCPQ
WQAPCLLLSILFDKQQLECSLQHWNGKAITVVDKRQALRRGPRVGSFLLQALNELRMQPQEQQTARSIVVSLLSHCHDLL
GSQAQTSSRSQALFEAIRQYMDIHYAEPLSRESVAQAFYLSPNYLSHLFQKCGPMGFNEYLNHIRLEQARMLLKGHDMKV
KDIAHACGFADSNYFCRLFRKTTERSPSEYRRQYHSQLTEKASPVKN

Sequences:

>Translated_287_residues
MDNDINQLIDALLKKQTSLGRVYFAGETRSPAEPVVQVDFPRLNILLDGQLPDQALGDNAPPLEANDVLYIPGDSWNCPQ
WQAPCLLLSILFDKQQLECSLQHWNGKAITVVDKRQALRRGPRVGSFLLQALNELRMQPQEQQTARSIVVSLLSHCHDLL
GSQAQTSSRSQALFEAIRQYMDIHYAEPLSRESVAQAFYLSPNYLSHLFQKCGPMGFNEYLNHIRLEQARMLLKGHDMKV
KDIAHACGFADSNYFCRLFRKTTERSPSEYRRQYHSQLTEKASPVKN
>Mature_287_residues
MDNDINQLIDALLKKQTSLGRVYFAGETRSPAEPVVQVDFPRLNILLDGQLPDQALGDNAPPLEANDVLYIPGDSWNCPQ
WQAPCLLLSILFDKQQLECSLQHWNGKAITVVDKRQALRRGPRVGSFLLQALNELRMQPQEQQTARSIVVSLLSHCHDLL
GSQAQTSSRSQALFEAIRQYMDIHYAEPLSRESVAQAFYLSPNYLSHLFQKCGPMGFNEYLNHIRLEQARMLLKGHDMKV
KDIAHACGFADSNYFCRLFRKTTERSPSEYRRQYHSQLTEKASPVKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=283, Percent_Identity=63.6042402826855, Blast_Score=354, Evalue=4e-99,
Organism=Escherichia coli, GI1788725, Length=275, Percent_Identity=34.5454545454545, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI1790339, Length=160, Percent_Identity=31.25, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32717; Mature: 32717

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNDINQLIDALLKKQTSLGRVYFAGETRSPAEPVVQVDFPRLNILLDGQLPDQALGDNA
CCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEECCEEEEEECCCCCHHHCCCCC
PPLEANDVLYIPGDSWNCPQWQAPCLLLSILFDKQQLECSLQHWNGKAITVVDKRQALRR
CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHC
GPRVGSFLLQALNELRMQPQEQQTARSIVVSLLSHCHDLLGSQAQTSSRSQALFEAIRQY
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHH
MDIHYAEPLSRESVAQAFYLSPNYLSHLFQKCGPMGFNEYLNHIRLEQARMLLKGHDMKV
HHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHH
KDIAHACGFADSNYFCRLFRKTTERSPSEYRRQYHSQLTEKASPVKN
HHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDNDINQLIDALLKKQTSLGRVYFAGETRSPAEPVVQVDFPRLNILLDGQLPDQALGDNA
CCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEECCEEEEEECCCCCHHHCCCCC
PPLEANDVLYIPGDSWNCPQWQAPCLLLSILFDKQQLECSLQHWNGKAITVVDKRQALRR
CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHC
GPRVGSFLLQALNELRMQPQEQQTARSIVVSLLSHCHDLLGSQAQTSSRSQALFEAIRQY
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHH
MDIHYAEPLSRESVAQAFYLSPNYLSHLFQKCGPMGFNEYLNHIRLEQARMLLKGHDMKV
HHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHH
KDIAHACGFADSNYFCRLFRKTTERSPSEYRRQYHSQLTEKASPVKN
HHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]