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The map label for this gene is rafA [H]

Identifier: 238892311

GI number: 238892311

Start: 58492

End: 60615

Strand: Direct

Name: rafA [H]

Synonym: KP1_0062

Alternate gene names: 238892311

Gene position: 58492-60615 (Clockwise)

Preceding gene: 238892310

Following gene: 238892312

Centisome position: 1.11

GC content: 61.91

Gene sequence:

>2124_bases
ATGTCTGATTCGCTGATTCACCTGCAAAGCGCCGGTGCCGATGTTGTGATTAAAACCCGCCCTTTCGCCGAAATTGTCTA
CTGGGGACCGCATTTAAGCCACTTTTCGCCGCAGGATGCCGACAGCCTGACGCGCCCGGTCGCCAACGGCAGACTGGATG
TCGATTCGCCAGTGACCTTAATGGCGGAGCTGGGCCATGGTCTGTTTGGCGCGCCGGGCATTGAAGGCCATCGTCAGGGG
CTGGATGCCTCTCCGCTGTTCACCACCAGCGAAGTGCGGCACAAGGGCCAGACGCTGACCCTGGTCAGCGAAGATCCGCA
GGCCGGCCTGCGCCTGCAGAGCGAGATCGCGTTGGATGCCAGCGGCGTGCTGAGCGTGCGCCATGGCGTGACCAATCTGC
GCGCCAGCCCATGGCAGGTGGATCGCCTGGCGGTCACGCTGCCGGTCGCCGAACGCGCTCGCGAGGTGATGGCTTTCCAT
GGCCGCTGGATCCGCGAGTTTCAGCCTCATCGCCTGACGCTGGAGCACGACAGCTTTGTGCTGGAGAACCGCCGCGGGCG
CACCTCTCACGAACATTTCCCGGCCCTGATCACCGGCAGCCGCGCCTTTAGCGAGATGCAGGGTGAAGTCTGGGGCGTGC
ATCTGGCCTGGAGCGGTAACCATCGCCTGCGGGCGGAGGTGAAAACCGATGGCCGTCGCTATCTGCAGGCCGAGGCGCTC
TATCTGCCGGGTGAAATGGCGCTGGCGGAAGGGGAAACCTTGTGGACGCCGTACCTGTATGCCAGCTACTCGGCGAATGG
GCTGAACGGCATGAGCCAGCAGTTCCATCGTTATCTGCGCGAACGGATTATTCGTTTCCCGGGCAACAAACCGCGCCCGG
TGCATCTCAACACCTGGGAGGGGATCTATTTCGACCACGACCCGGACTACATCATGCGTATGGCCGACGAAGCGGCGGCC
CTGGGCGTCGAGCGCTTTATTATCGATGACGGCTGGTTTAAAGGGCGCAACGACGACTGGGCGGCGCTTGGCGACTGGTA
TCTCGATGAGAAAAAATACCCCTACGGCCTGACGCCGGTTATCGATCACGTGAAGTCTCTGGGTATGGAATTCGGTATCT
GGGTGGAGCCGGAAATGATTAACCCGGATTCCGATCTGTACCGGGCGCACCCGGACTGGGTGCTGGCGCTGCCGGGCTAT
ACCCCGCTGACCGGCCGCCATCAGTTTGTCCTGAACCTCAACATTCCCGAAGCGTTTGATTATCTGCTGGAGCGGATGAG
CTGGCTGCTGGGCGAGCATGCGGTGGACTACGTGAAGTGGGATATGAACCGCGAGTTGGTGCAGCCTGGGCATCAGGGAC
GCGCCGCTGCAGACGCGCAAACGCGCCAGTTTTACCGCCTGCTGGATACGCTGGTGGCCCGTTTCCCGCACATTGAATTT
GAATCCTGCTCCTCCGGCGGCGGACGGATCGATTATGAAGTCCTCAAACGCAGCCATCGCTTCTGGGCTTCTGACAACAA
TGACGCCCTTGAGCGCAACACCATCCAGCGCGGCATGAGCTACTTCTTTCCACCCGAGGTAATGGGCGCGCATATTGGCA
ATCGCCACTGTCATGCCACCTTCCGCCAGCATAGTATCGCCTTCCGCGGCCTGACGGCGCTGTTCGGTCATATGGGCCTT
GAGCTGGATCCGGTGAGCGCCGATGAAGAAGAGCGCGCCGGATACCGAAAATATGCGGCCCTGCATAAACAGTGGCGCGA
CGTGATCCATCACGGCGTGCAGTGGCGAATAGATATGCCGGACGCCACCACCCTTGCCCATGGCGTCGTCAGCCCGGATA
AAGCGCAGGCGATCTTCCTCGTTAGCCAGCTGGCGATGCCGGACTACACCCTGATGGCGCCCCTGCGCCTGGCGGGCCTG
GAGGCGAGCGCCCGCTATCAGGTGACGCTCCTCGATCATCCGAACATTCAGATCACCGGTGAGGGCGGCCACACCATGCG
GAAGCTGCCGGCATGGATGACGACGCCGCAGACGGTGAGCGGTGAGTGGCTGCAGCAGGCGGGGCTGGCGCTACCCATCC
TCGACCCGGAAAGCGCCATTCTGATTGGTCTGCAACGCGTGTGA

Upstream 100 bases:

>100_bases
ACCCGTAATTCTGAAGCCGATCACGGATCCGAAACGTTTTGGTTGGCATCCGAAACGTTTCGGATCAACAGTAAGACATT
CCTTGTGATGGAGATGTCTG

Downstream 100 bases:

>100_bases
TGGTATCGGGCTGCGCTGCGGCCCTTCTTGAGGAAAATATAATGAACCCGACCGTCTGTACCCACAAAAACAACCCCAAC
TTCTGGATTTTCGGGCTGTT

Product: putative glycoprotein

Products: NA

Alternate protein names: Melibiase [H]

Number of amino acids: Translated: 707; Mature: 706

Protein sequence:

>707_residues
MSDSLIHLQSAGADVVIKTRPFAEIVYWGPHLSHFSPQDADSLTRPVANGRLDVDSPVTLMAELGHGLFGAPGIEGHRQG
LDASPLFTTSEVRHKGQTLTLVSEDPQAGLRLQSEIALDASGVLSVRHGVTNLRASPWQVDRLAVTLPVAERAREVMAFH
GRWIREFQPHRLTLEHDSFVLENRRGRTSHEHFPALITGSRAFSEMQGEVWGVHLAWSGNHRLRAEVKTDGRRYLQAEAL
YLPGEMALAEGETLWTPYLYASYSANGLNGMSQQFHRYLRERIIRFPGNKPRPVHLNTWEGIYFDHDPDYIMRMADEAAA
LGVERFIIDDGWFKGRNDDWAALGDWYLDEKKYPYGLTPVIDHVKSLGMEFGIWVEPEMINPDSDLYRAHPDWVLALPGY
TPLTGRHQFVLNLNIPEAFDYLLERMSWLLGEHAVDYVKWDMNRELVQPGHQGRAAADAQTRQFYRLLDTLVARFPHIEF
ESCSSGGGRIDYEVLKRSHRFWASDNNDALERNTIQRGMSYFFPPEVMGAHIGNRHCHATFRQHSIAFRGLTALFGHMGL
ELDPVSADEEERAGYRKYAALHKQWRDVIHHGVQWRIDMPDATTLAHGVVSPDKAQAIFLVSQLAMPDYTLMAPLRLAGL
EASARYQVTLLDHPNIQITGEGGHTMRKLPAWMTTPQTVSGEWLQQAGLALPILDPESAILIGLQRV

Sequences:

>Translated_707_residues
MSDSLIHLQSAGADVVIKTRPFAEIVYWGPHLSHFSPQDADSLTRPVANGRLDVDSPVTLMAELGHGLFGAPGIEGHRQG
LDASPLFTTSEVRHKGQTLTLVSEDPQAGLRLQSEIALDASGVLSVRHGVTNLRASPWQVDRLAVTLPVAERAREVMAFH
GRWIREFQPHRLTLEHDSFVLENRRGRTSHEHFPALITGSRAFSEMQGEVWGVHLAWSGNHRLRAEVKTDGRRYLQAEAL
YLPGEMALAEGETLWTPYLYASYSANGLNGMSQQFHRYLRERIIRFPGNKPRPVHLNTWEGIYFDHDPDYIMRMADEAAA
LGVERFIIDDGWFKGRNDDWAALGDWYLDEKKYPYGLTPVIDHVKSLGMEFGIWVEPEMINPDSDLYRAHPDWVLALPGY
TPLTGRHQFVLNLNIPEAFDYLLERMSWLLGEHAVDYVKWDMNRELVQPGHQGRAAADAQTRQFYRLLDTLVARFPHIEF
ESCSSGGGRIDYEVLKRSHRFWASDNNDALERNTIQRGMSYFFPPEVMGAHIGNRHCHATFRQHSIAFRGLTALFGHMGL
ELDPVSADEEERAGYRKYAALHKQWRDVIHHGVQWRIDMPDATTLAHGVVSPDKAQAIFLVSQLAMPDYTLMAPLRLAGL
EASARYQVTLLDHPNIQITGEGGHTMRKLPAWMTTPQTVSGEWLQQAGLALPILDPESAILIGLQRV
>Mature_706_residues
SDSLIHLQSAGADVVIKTRPFAEIVYWGPHLSHFSPQDADSLTRPVANGRLDVDSPVTLMAELGHGLFGAPGIEGHRQGL
DASPLFTTSEVRHKGQTLTLVSEDPQAGLRLQSEIALDASGVLSVRHGVTNLRASPWQVDRLAVTLPVAERAREVMAFHG
RWIREFQPHRLTLEHDSFVLENRRGRTSHEHFPALITGSRAFSEMQGEVWGVHLAWSGNHRLRAEVKTDGRRYLQAEALY
LPGEMALAEGETLWTPYLYASYSANGLNGMSQQFHRYLRERIIRFPGNKPRPVHLNTWEGIYFDHDPDYIMRMADEAAAL
GVERFIIDDGWFKGRNDDWAALGDWYLDEKKYPYGLTPVIDHVKSLGMEFGIWVEPEMINPDSDLYRAHPDWVLALPGYT
PLTGRHQFVLNLNIPEAFDYLLERMSWLLGEHAVDYVKWDMNRELVQPGHQGRAAADAQTRQFYRLLDTLVARFPHIEFE
SCSSGGGRIDYEVLKRSHRFWASDNNDALERNTIQRGMSYFFPPEVMGAHIGNRHCHATFRQHSIAFRGLTALFGHMGLE
LDPVSADEEERAGYRKYAALHKQWRDVIHHGVQWRIDMPDATTLAHGVVSPDKAQAIFLVSQLAMPDYTLMAPLRLAGLE
ASARYQVTLLDHPNIQITGEGGHTMRKLPAWMTTPQTVSGEWLQQAGLALPILDPESAILIGLQRV

Specific function: Unknown

COG id: COG3345

COG function: function code G; Alpha-galactosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 36 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR002252
- InterPro:   IPR017853
- InterPro:   IPR000111 [H]

Pfam domain/function: PF02065 Melibiase [H]

EC number: =3.2.1.22 [H]

Molecular weight: Translated: 79932; Mature: 79801

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS00512 ALPHA_GALACTOSIDASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSLIHLQSAGADVVIKTRPFAEIVYWGPHLSHFSPQDADSLTRPVANGRLDVDSPVTL
CCCCEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHH
MAELGHGLFGAPGIEGHRQGLDASPLFTTSEVRHKGQTLTLVSEDPQAGLRLQSEIALDA
HHHHCCCCCCCCCCCHHHCCCCCCCCEECHHHHHCCCEEEEEECCCCCCCEEEHHEEECC
SGVLSVRHGVTNLRASPWQVDRLAVTLPVAERAREVMAFHGRWIREFQPHRLTLEHDSFV
CCHHHHHHCHHHCCCCCCEEEEEEEEECHHHHHHHHHHHHCCHHHCCCCCEEEEECCCEE
LENRRGRTSHEHFPALITGSRAFSEMQGEVWGVHLAWSGNHRLRAEVKTDGRRYLQAEAL
EECCCCCCCCCCCCEEEECCHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCEEEEEEEE
YLPGEMALAEGETLWTPYLYASYSANGLNGMSQQFHRYLRERIIRFPGNKPRPVHLNTWE
ECCCCEEEECCCEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
GIYFDHDPDYIMRMADEAAALGVERFIIDDGWFKGRNDDWAALGDWYLDEKKYPYGLTPV
CEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEECCCEEECCCCCCCCCCHH
IDHVKSLGMEFGIWVEPEMINPDSDLYRAHPDWVLALPGYTPLTGRHQFVLNLNIPEAFD
HHHHHHCCCCCCEEECCCEECCCCHHEECCCCEEEECCCCCCCCCCEEEEEECCCHHHHH
YLLERMSWLLGEHAVDYVKWDMNRELVQPGHQGRAAADAQTRQFYRLLDTLVARFPHIEF
HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
ESCSSGGGRIDYEVLKRSHRFWASDNNDALERNTIQRGMSYFFPPEVMGAHIGNRHCHAT
ECCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHH
FRQHSIAFRGLTALFGHMGLELDPVSADEEERAGYRKYAALHKQWRDVIHHGVQWRIDMP
HHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
DATTLAHGVVSPDKAQAIFLVSQLAMPDYTLMAPLRLAGLEASARYQVTLLDHPNIQITG
CHHHHHHCCCCCCCHHHEEEEHHHCCCCEEEECCHHHCCCCCCCEEEEEEEECCCEEEEC
EGGHTMRKLPAWMTTPQTVSGEWLQQAGLALPILDPESAILIGLQRV
CCCCCHHHCCHHCCCCCCCCHHHHHHCCCEEEEECCCCEEEEEEECC
>Mature Secondary Structure 
SDSLIHLQSAGADVVIKTRPFAEIVYWGPHLSHFSPQDADSLTRPVANGRLDVDSPVTL
CCCEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHH
MAELGHGLFGAPGIEGHRQGLDASPLFTTSEVRHKGQTLTLVSEDPQAGLRLQSEIALDA
HHHHCCCCCCCCCCCHHHCCCCCCCCEECHHHHHCCCEEEEEECCCCCCCEEEHHEEECC
SGVLSVRHGVTNLRASPWQVDRLAVTLPVAERAREVMAFHGRWIREFQPHRLTLEHDSFV
CCHHHHHHCHHHCCCCCCEEEEEEEEECHHHHHHHHHHHHCCHHHCCCCCEEEEECCCEE
LENRRGRTSHEHFPALITGSRAFSEMQGEVWGVHLAWSGNHRLRAEVKTDGRRYLQAEAL
EECCCCCCCCCCCCEEEECCHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCEEEEEEEE
YLPGEMALAEGETLWTPYLYASYSANGLNGMSQQFHRYLRERIIRFPGNKPRPVHLNTWE
ECCCCEEEECCCEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
GIYFDHDPDYIMRMADEAAALGVERFIIDDGWFKGRNDDWAALGDWYLDEKKYPYGLTPV
CEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEECCCEEECCCCCCCCCCHH
IDHVKSLGMEFGIWVEPEMINPDSDLYRAHPDWVLALPGYTPLTGRHQFVLNLNIPEAFD
HHHHHHCCCCCCEEECCCEECCCCHHEECCCCEEEECCCCCCCCCCEEEEEECCCHHHHH
YLLERMSWLLGEHAVDYVKWDMNRELVQPGHQGRAAADAQTRQFYRLLDTLVARFPHIEF
HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE
ESCSSGGGRIDYEVLKRSHRFWASDNNDALERNTIQRGMSYFFPPEVMGAHIGNRHCHAT
ECCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHH
FRQHSIAFRGLTALFGHMGLELDPVSADEEERAGYRKYAALHKQWRDVIHHGVQWRIDMP
HHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
DATTLAHGVVSPDKAQAIFLVSQLAMPDYTLMAPLRLAGLEASARYQVTLLDHPNIQITG
CHHHHHHCCCCCCCHHHEEEEHHHCCCCEEEECCHHHCCCCCCCEEEEEEEECCCEEEEC
EGGHTMRKLPAWMTTPQTVSGEWLQQAGLALPILDPESAILIGLQRV
CCCCCHHHCCHHCCCCCCCCHHHHHHCCCEEEEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2556373; 2180920; 786627 [H]