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The map label for this gene is rbsC [H]

Identifier: 238892265

GI number: 238892265

Start: 9583

End: 10548

Strand: Direct

Name: rbsC [H]

Synonym: KP1_0009

Alternate gene names: 238892265

Gene position: 9583-10548 (Clockwise)

Preceding gene: 238892264

Following gene: 238892266

Centisome position: 0.18

GC content: 57.35

Gene sequence:

>966_bases
ATGACAACCCAGGCTGTTTCTGGTCGCCGCTATTTCACAAAAGCGTGGCTGATGGAGCAAAAATCGCTGATTGCCCTGCT
GGTGCTGATCGCGGTGGTATCGACCATGAGCCCCAACTTTTTTACCGTCAATAACCTGTTCAATATTCTGCAGCAAACCT
CCGTTAACGCCATTATGGCGGTAGGGATGACGCTGGTCATACTGACCTCGGGGATCGATCTGTCCGTCGGCTCCCTGCTG
GCGCTCACCGGTGCGGTGGCAGCGTCGATCGTTGGCATTGAGGTTAATGCGCTGGTGGCGGTCGCGGCTGCCCTCGCATT
AGGTGCGGCGATCGGCGCAGTCACCGGGGTGATTGTAGCGAGAGGCCGCGTGCAGGCCTTCATCGCCACCCTGGTGATGA
TGCTGCTGCTGCGCGGCGTAACCATGGTGTACACCAACGGCAGCCCGATCAATACCGGCTTTAGCGATAATGCCGATCTG
TTCGGCTGGTTTGGCATCGGGCGTCCGCTGGGGATCCCGACGCCGGTATGGATCATGGCGATTGTCTTCCTGGCGGCCTG
GTACATGCTGCACCATACTCGCCTGGGCCGTTATATTTATGCCCTGGGCGGTAATGAAGCGGCGACGCGTCTGTCCGGGA
TTAGCGTCAATAAAGTTAAAATTATCGTTTACGCCTTGTGCGGAATGCTGGCTTCGCTGGCCGGGATCATCGAAGTGGCG
CGTCTCTCCTCCGCGCAGCCGACGGCGGGGACGGGCTATGAGCTGGACGCCATTGCGGCGGTGGTGCTCGGCGGCACCAG
CCTCGCTGGTGGCAAAGGACGCATTGTCGGCACGCTGATTGGTGCGCTGATCCTTGGCTTCCTGAATAATGGTCTTAATC
TTTTAGGCGTTTCTTCCTATTACCAGATGATCGTTAAAGCGGTGGTGATTTTGCTGGCGGTACTGGTAGATAACAAAAAG
CAGTAA

Upstream 100 bases:

>100_bases
GGCATCTCGGCGGTGAATTCACACGCGAGCAGGCCACCCAGGAAGTATTGATGGCTGCCGCTGTGGGCAAGCTTAACCGT
GTGAATCAGGAGTAAGAAAG

Downstream 100 bases:

>100_bases
CTGAGAACTCTACAGGACATCTTAACTATGAATATGAAAAAACTGGCGACCCTGGTCTCTGCTGTTGCGCTAAGTGCGAC
CGTTAGCGCGAACGCGATGG

Product: ribose ABC transporter permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MTTQAVSGRRYFTKAWLMEQKSLIALLVLIAVVSTMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLL
ALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVARGRVQAFIATLVMMLLLRGVTMVYTNGSPINTGFSDNADL
FGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYALCGMLASLAGIIEVA
RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKK
Q

Sequences:

>Translated_321_residues
MTTQAVSGRRYFTKAWLMEQKSLIALLVLIAVVSTMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLL
ALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVARGRVQAFIATLVMMLLLRGVTMVYTNGSPINTGFSDNADL
FGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYALCGMLASLAGIIEVA
RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKK
Q
>Mature_320_residues
TTQAVSGRRYFTKAWLMEQKSLIALLVLIAVVSTMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA
LTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVARGRVQAFIATLVMMLLLRGVTMVYTNGSPINTGFSDNADLF
GWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYALCGMLASLAGIIEVAR
LSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=321, Percent_Identity=95.6386292834891, Blast_Score=575, Evalue=1e-165,
Organism=Escherichia coli, GI1790524, Length=315, Percent_Identity=39.6825396825397, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI1788896, Length=315, Percent_Identity=38.0952380952381, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI145693152, Length=310, Percent_Identity=35.1612903225806, Blast_Score=174, Evalue=6e-45,
Organism=Escherichia coli, GI1789992, Length=359, Percent_Identity=35.6545961002786, Blast_Score=167, Evalue=8e-43,
Organism=Escherichia coli, GI87082395, Length=302, Percent_Identity=37.4172185430464, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI1788471, Length=335, Percent_Identity=36.4179104477612, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI145693214, Length=293, Percent_Identity=36.518771331058, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787793, Length=292, Percent_Identity=32.8767123287671, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787794, Length=292, Percent_Identity=29.7945205479452, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33415; Mature: 33284

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQAVSGRRYFTKAWLMEQKSLIALLVLIAVVSTMSPNFFTVNNLFNILQQTSVNAIMA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHH
VGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGRVQAFIATLVMMLLLRGVTMVYTNGSPINTGFSDNADLFGWFGIGRPLGIPTPVWIMA
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
IVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYALCGMLASLAGIIEVA
HHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSY
HHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHH
YQMIVKAVVILLAVLVDNKKQ
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTQAVSGRRYFTKAWLMEQKSLIALLVLIAVVSTMSPNFFTVNNLFNILQQTSVNAIMA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHH
VGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGRVQAFIATLVMMLLLRGVTMVYTNGSPINTGFSDNADLFGWFGIGRPLGIPTPVWIMA
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
IVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYALCGMLASLAGIIEVA
HHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSY
HHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHH
YQMIVKAVVILLAVLVDNKKQ
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]