Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

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The map label for this gene is 238028964

Identifier: 238028964

GI number: 238028964

Start: 3899046

End: 3899864

Strand: Direct

Name: 238028964

Synonym: bglu_1g34330

Alternate gene names: NA

Gene position: 3899046-3899864 (Clockwise)

Preceding gene: 238028962

Following gene: 238028967

Centisome position: 99.81

GC content: 60.56

Gene sequence:

>819_bases
ATGGAAGCGCCAATCATTGACGACGAACTGTGGATACTGATCGAACCATTGCTGCCACCTGCGAAGCTTCGAGCGAAGAG
CGATCCTGGTCGCCCGCGCGTGTCCGACCGTGCGGCTCTCAACGGCATCCTGTTCGTGTTCAAAACGGGAATTCGTTGGA
ACCACTTGCCGACTCGTCTGGGCTTTGGCTCGGGCGCCACATGCTGGCGGCGATTGAGCGACTGGCAAAAGGCTGGTGTA
TGGGACCAACTGCACGAGTTGCTACTCGACAAGTTGCGTGCGGCCGGCCAAATCGATCTGTCATACGCTGCGGTCGATTC
GTCGTCCGTGCGCGCCGTTGGGGCGGGCGAAAAACTGGCCCGAACCCCCACCGATCGCGCGCGACCCGGTTCCAAGCACC
ACGTCCTCGTAGACGCCAACGGCGTTCCTCTCGTTGCGATCCTGACTGGCGCGAACACCAACGACGTCACGCAGTTGCTG
CCGCTCGTTGATGCGATTCCACCCATTCGCGGCGTTCGTGGCCGACCGCTTCAGAAGCCCGGCGTCGTCTACGCCGATCG
CGGCTACGATTCCACCCGACATCGTCGCGCGTTGCGCGAACGCGGTATCAAGCCCGTGATCGCCAAGCGCCGGACCGAGC
ATGGCAGTGGTCTGGGCAAGTATCGTTGGGTGGTCGAACGTACGCATTCCTGGCTCCACAATTTCCGGCGCCTACGCACT
CGCTTCGAGCGAAGTGCCTACATTCACGAAGCATTCCTCAAACTTGGCTGCTCGATCATCTGTTGGAACATCTTCAGACG
AGCTGAGCAGGGTTTTTGA

Upstream 100 bases:

>100_bases
GTAGCCTTCTTTAGAGGCCAGTTCAAAAACTCCCGAGAGGGGCTGTTTACTTCCTCGGCAAGCTGTTAACCTTGGGCATC
AGAACAACGGAAGTCCAAGG

Downstream 100 bases:

>100_bases
ACTGGCCTCTTAAAATGGCCTTCTCACGCTCGAGGCGTTCGATACGCGCCTCGAGTTGCTGAATACGCTGTTGATCCGGC
GTGATTGCCTTGCCCTGCGG

Product: transposase, IS4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MEAPIIDDELWILIEPLLPPAKLRAKSDPGRPRVSDRAALNGILFVFKTGIRWNHLPTRLGFGSGATCWRRLSDWQKAGV
WDQLHELLLDKLRAAGQIDLSYAAVDSSSVRAVGAGEKLARTPTDRARPGSKHHVLVDANGVPLVAILTGANTNDVTQLL
PLVDAIPPIRGVRGRPLQKPGVVYADRGYDSTRHRRALRERGIKPVIAKRRTEHGSGLGKYRWVVERTHSWLHNFRRLRT
RFERSAYIHEAFLKLGCSIICWNIFRRAEQGF

Sequences:

>Translated_272_residues
MEAPIIDDELWILIEPLLPPAKLRAKSDPGRPRVSDRAALNGILFVFKTGIRWNHLPTRLGFGSGATCWRRLSDWQKAGV
WDQLHELLLDKLRAAGQIDLSYAAVDSSSVRAVGAGEKLARTPTDRARPGSKHHVLVDANGVPLVAILTGANTNDVTQLL
PLVDAIPPIRGVRGRPLQKPGVVYADRGYDSTRHRRALRERGIKPVIAKRRTEHGSGLGKYRWVVERTHSWLHNFRRLRT
RFERSAYIHEAFLKLGCSIICWNIFRRAEQGF
>Mature_272_residues
MEAPIIDDELWILIEPLLPPAKLRAKSDPGRPRVSDRAALNGILFVFKTGIRWNHLPTRLGFGSGATCWRRLSDWQKAGV
WDQLHELLLDKLRAAGQIDLSYAAVDSSSVRAVGAGEKLARTPTDRARPGSKHHVLVDANGVPLVAILTGANTNDVTQLL
PLVDAIPPIRGVRGRPLQKPGVVYADRGYDSTRHRRALRERGIKPVIAKRRTEHGSGLGKYRWVVERTHSWLHNFRRLRT
RFERSAYIHEAFLKLGCSIICWNIFRRAEQGF

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3293

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 30648; Mature: 30648

Theoretical pI: Translated: 11.22; Mature: 11.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAPIIDDELWILIEPLLPPAKLRAKSDPGRPRVSDRAALNGILFVFKTGIRWNHLPTRL
CCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHEEEECCCCCCCCCCCC
GFGSGATCWRRLSDWQKAGVWDQLHELLLDKLRAAGQIDLSYAAVDSSSVRAVGAGEKLA
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCHHHH
RTPTDRARPGSKHHVLVDANGVPLVAILTGANTNDVTQLLPLVDAIPPIRGVRGRPLQKP
CCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
GVVYADRGYDSTRHRRALRERGIKPVIAKRRTEHGSGLGKYRWVVERTHSWLHNFRRLRT
CEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
RFERSAYIHEAFLKLGCSIICWNIFRRAEQGF
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEAPIIDDELWILIEPLLPPAKLRAKSDPGRPRVSDRAALNGILFVFKTGIRWNHLPTRL
CCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHEEEECCCCCCCCCCCC
GFGSGATCWRRLSDWQKAGVWDQLHELLLDKLRAAGQIDLSYAAVDSSSVRAVGAGEKLA
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCHHHH
RTPTDRARPGSKHHVLVDANGVPLVAILTGANTNDVTQLLPLVDAIPPIRGVRGRPLQKP
CCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
GVVYADRGYDSTRHRRALRERGIKPVIAKRRTEHGSGLGKYRWVVERTHSWLHNFRRLRT
CEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
RFERSAYIHEAFLKLGCSIICWNIFRRAEQGF
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1650732 [H]