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The map label for this gene is yafC [H]

Identifier: 238028961

GI number: 238028961

Start: 3893376

End: 3894350

Strand: Direct

Name: yafC [H]

Synonym: bglu_1g34260

Alternate gene names: 238028961

Gene position: 3893376-3894350 (Clockwise)

Preceding gene: 238028959

Following gene: 238028962

Centisome position: 99.66

GC content: 68.92

Gene sequence:

>975_bases
ATGGACTATTTTTCCGCCATCCGCGCCTTCCTGTGCGCCGCCGAATCGGGCAGCTTCAGCAAGGCCGCGCATCGGATCGC
GGTCAAGACCTCGACCGTCTCGCGCTATGTGGCCGACCTCGAACGCGATCTCGGCATCGCACTGTTCAACCGCTCCACGC
GCGGACTCGTGCTGACCGAGGGCGGGCGGCTGTTCCGCGAACATGCGCTAGTGGTGATGAGCGCGCTCGACGAGGCACGC
GATGCCACGTCGTCGCTGAACGCGTCGCCGCGCGGGCTGCTGCGCGTGACGATGCCGCGTGCGTTCGGGTTGCGGCACGT
GATCCCGCACTTGCCCGAACTCGCCGAGCGCTATCCGGGGATCGACGTCGACGCGGTGATGACCGACACGACGCTGAACC
TGATCGATGCCGGCATCGATCTGGCGATCCGGATCGGCGCCCTGCCCGATTCGCAGTTGATCGCGCGGCGGCTCGCCACG
CACCGGCGCGTGGCCTGCGCGAGTCCTGCCTATGTGGAACGGCACGGCATGCCGGCCACGCCGGAGGCGCTCGCCGGCCA
TGCCACGCTGCGATTTCCGTTGGTATCCGACGATCGATGGTGGTTCATTCGGCGCCAGGCACGGGTCGGGCAGGCGCCGC
AGGAAACCGGCGATGCCGGCGACAGCGCGCCGGGCAAGGCGAGGGACGTAGCGGTGCGGCTGAGCGGCCGGCTGCGCGTG
GACGACGCCGAGGCGCTGCGGCAGCTCGCGATCGCCGGATGCGGCATCGCCCTGCTGCCGACCTGGGCGATCGGCAGCGC
ACTGCGCGACGGCAGCCTGCTGCATCTGCTGCCTGACTGGGATGCGCAGGCCACGCGCGCGGCATCGGCGATCTGGGCCG
TCTATCCGCCGAAAAAAACCGTTTCGTCGAAGGTGCGTGCCTTTATCGACTTCCAGGCCGAGGTGTTCGCGCGCCCCGGC
TACTGGGACTTTTGA

Upstream 100 bases:

>100_bases
CGGAAATGAGCCTTGCACGAAAGGGATAACCGGAGCGACCGGCTTGCCCTAAACTGCACGGAACGAAACAGCGGCACGCG
GCTGGGCGGGGCCGACTTCC

Downstream 100 bases:

>100_bases
TCAGTAGCCGCGCTGCAAGCGCTGCTCGTACAGTCGTTCCTGGCGCACCCGTTCGTCGTGGATGCGTTGCTCCTGCTGCC
GCTGGTAGCGCAGGCGGTCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MDYFSAIRAFLCAAESGSFSKAAHRIAVKTSTVSRYVADLERDLGIALFNRSTRGLVLTEGGRLFREHALVVMSALDEAR
DATSSLNASPRGLLRVTMPRAFGLRHVIPHLPELAERYPGIDVDAVMTDTTLNLIDAGIDLAIRIGALPDSQLIARRLAT
HRRVACASPAYVERHGMPATPEALAGHATLRFPLVSDDRWWFIRRQARVGQAPQETGDAGDSAPGKARDVAVRLSGRLRV
DDAEALRQLAIAGCGIALLPTWAIGSALRDGSLLHLLPDWDAQATRAASAIWAVYPPKKTVSSKVRAFIDFQAEVFARPG
YWDF

Sequences:

>Translated_324_residues
MDYFSAIRAFLCAAESGSFSKAAHRIAVKTSTVSRYVADLERDLGIALFNRSTRGLVLTEGGRLFREHALVVMSALDEAR
DATSSLNASPRGLLRVTMPRAFGLRHVIPHLPELAERYPGIDVDAVMTDTTLNLIDAGIDLAIRIGALPDSQLIARRLAT
HRRVACASPAYVERHGMPATPEALAGHATLRFPLVSDDRWWFIRRQARVGQAPQETGDAGDSAPGKARDVAVRLSGRLRV
DDAEALRQLAIAGCGIALLPTWAIGSALRDGSLLHLLPDWDAQATRAASAIWAVYPPKKTVSSKVRAFIDFQAEVFARPG
YWDF
>Mature_324_residues
MDYFSAIRAFLCAAESGSFSKAAHRIAVKTSTVSRYVADLERDLGIALFNRSTRGLVLTEGGRLFREHALVVMSALDEAR
DATSSLNASPRGLLRVTMPRAFGLRHVIPHLPELAERYPGIDVDAVMTDTTLNLIDAGIDLAIRIGALPDSQLIARRLAT
HRRVACASPAYVERHGMPATPEALAGHATLRFPLVSDDRWWFIRRQARVGQAPQETGDAGDSAPGKARDVAVRLSGRLRV
DDAEALRQLAIAGCGIALLPTWAIGSALRDGSLLHLLPDWDAQATRAASAIWAVYPPKKTVSSKVRAFIDFQAEVFARPG
YWDF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=316, Percent_Identity=36.3924050632911, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI1789440, Length=299, Percent_Identity=30.1003344481605, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI145693193, Length=316, Percent_Identity=31.6455696202532, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87081978, Length=314, Percent_Identity=29.6178343949045, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1789639, Length=322, Percent_Identity=27.639751552795, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787128, Length=306, Percent_Identity=24.5098039215686, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787589, Length=310, Percent_Identity=26.4516129032258, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788706, Length=189, Percent_Identity=32.2751322751323, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1789173, Length=188, Percent_Identity=31.3829787234043, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786713, Length=288, Percent_Identity=28.4722222222222, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790011, Length=286, Percent_Identity=22.3776223776224, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI157672245, Length=118, Percent_Identity=32.2033898305085, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35289; Mature: 35289

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYFSAIRAFLCAAESGSFSKAAHRIAVKTSTVSRYVADLERDLGIALFNRSTRGLVLTE
CCHHHHHHHHHHHCCCCCHHHHHHEEEEEHHHHHHHHHHHHHCCCEEEECCCCCEEEEEC
GGRLFREHALVVMSALDEARDATSSLNASPRGLLRVTMPRAFGLRHVIPHLPELAERYPG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCHHHHHHCCC
IDVDAVMTDTTLNLIDAGIDLAIRIGALPDSQLIARRLATHRRVACASPAYVERHGMPAT
CCEEEEEECCHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
PEALAGHATLRFPLVSDDRWWFIRRQARVGQAPQETGDAGDSAPGKARDVAVRLSGRLRV
HHHHCCCCEEEEEEECCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEE
DDAEALRQLAIAGCGIALLPTWAIGSALRDGSLLHLLPDWDAQATRAASAIWAVYPPKKT
CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHEEEEEECCHHH
VSSKVRAFIDFQAEVFARPGYWDF
HHHHHHHHHEECHHEEECCCCCCC
>Mature Secondary Structure
MDYFSAIRAFLCAAESGSFSKAAHRIAVKTSTVSRYVADLERDLGIALFNRSTRGLVLTE
CCHHHHHHHHHHHCCCCCHHHHHHEEEEEHHHHHHHHHHHHHCCCEEEECCCCCEEEEEC
GGRLFREHALVVMSALDEARDATSSLNASPRGLLRVTMPRAFGLRHVIPHLPELAERYPG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCHHHHHHCCC
IDVDAVMTDTTLNLIDAGIDLAIRIGALPDSQLIARRLATHRRVACASPAYVERHGMPAT
CCEEEEEECCHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
PEALAGHATLRFPLVSDDRWWFIRRQARVGQAPQETGDAGDSAPGKARDVAVRLSGRLRV
HHHHCCCCEEEEEEECCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEE
DDAEALRQLAIAGCGIALLPTWAIGSALRDGSLLHLLPDWDAQATRAASAIWAVYPPKKT
CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHEEEEEECCHHH
VSSKVRAFIDFQAEVFARPGYWDF
HHHHHHHHHEECHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]