| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is topB [H]
Identifier: 238028948
GI number: 238028948
Start: 3878260
End: 3880914
Strand: Direct
Name: topB [H]
Synonym: bglu_1g34130
Alternate gene names: 238028948
Gene position: 3878260-3880914 (Clockwise)
Preceding gene: 238028947
Following gene: 238028950
Centisome position: 99.28
GC content: 66.1
Gene sequence:
>2655_bases ATGTCCAAAGCACTGATCATTGCGGAAAAGCCTTCTGTCGCGAACGACATCGCGCGCGCCCTGGGCGGCTTTACCAAGCA TGACGAATACTTCGAAAGCGACGAGTACGTCCTGTCGTCCGCGGTCGGCCACTTGCTCGAGATCGCAGCGCCCGAGGAGT ACGAGGTCAAGCGCGGCAAGTGGAGTTTCGCGCATCTGCCCGTCATCCCCCCGCATTTCGACCTCAATCCGATCGCAAAA AGCGAATCGCGGCTGAAGGTCCTGACGAAGCTGATCAAGCGCAAGGACGTGGACCTGCTGATCAACGCCTGTGACGCGGG GCGCGAGGGCGAGCTGATTTTCCGCCTGATCGCGCAGCACGCGAAGGCCAAGCAGCCGGTCCGGCGCCTGTGGCTGCAAT CGATGACGCCGGCCGCGATCCGCGACGGGTTCGCGAAACTGCGCAGCGACGAGGACATGCAGCCGCTCGCCGACGCGGCG CGCTGCCGCTCGGAGGCGGACTGGCTGGTCGGCATCAACGGCACGCGCGCGATGACCGCCTTCAACAGCAAGGGCGGCGG CTTCTTCCTGACCACCGTCGGCCGGGTGCAGACGCCCACGCTGTCGATCGTCGTCGAGCGCGAGGAGAAGATCCGCCGTT TCGTGCCGCGCGACTACTGGGAAGTGCGCGCCGAGTTCGTCTGCGCGGGCGGCTTCTACGAGGGACGCTGGTACGACCCC AAATTCAAGCGCGACGAGCACGATCCCGAGAAGCGCGACTCGCGGCTCTGGAGCCTGCCGGCTGCCGAGACGATCGTGGC CGCCTGCCGCGGCCAGATCGGCGTGGTCAGCGAGGAATCGAAGCCGTCGACCCAGCTCTCGCCGCTGCTGTACGACCTGA CGAGCCTGCAGCGCGAGGCGAACAGCCGCTTCGGCTTCTCGGCCAAGAACACGCTCGGCCTCGCCCAGGCCTTGTATGAA AAGCACAAGGTGCTGACCTACCCGCGTACCGACGCGCGCGCGCTGCCGGAGGACTACCTCGGCACCGTGAAGTCGACGCT CGAGATGCTCAAGGAAAGCAACAACTACCTGCCGCACGCCAAGCAGGTGCTCGACAAGGGCTGGGTCAAGCCGAACAAGC GGATCTTCGACAACACCAAGATCAGCGACCACTTCGCCATCATCCCGACGCTGCAGGCGCCGAAGGCGCTGTCCGAGCCC GAGCAGAAGCTCTACGACCTGGTGGTCAAGCGCTTCCTCGCCGTGTTCTTCCCGGCTGCCGAGTACAAGGTCACGACGCG CATCACCGAGGTGGCCGGCCATCACTTCAAGACCGAGGGCAAGGTGCTGGTCGAGCCGGGCTGGCTGCAGGTGTACGGCC GCGACGCCGAGGGCGCCGACGCCAACCTCGTGCCGGTGCAGAAGGACGAGAAGGTCAAGACCGACAAGATCGCCGCGCAC GCGCTCGTCACCAAGCCGCCCGCGCGCTACTCGGAAGCGACGCTGCTCTCGGCGATGGAAGGCGCGGGCAAGCTGGTCGA GGACGACGAGCTGCGCGAGGCGATGGCCGCCAAGGGCCTCGGCACGCCAGCCACGCGCGCGGCCATCATCGAAGGGCTGC TCGGCGAGAAATACCTGCTGCGCGAAGGCCGCGAGCTGATCCCGACCGCCAAGGCGTTCCAGCTGATGACGCTGCTGCGC GGGCTCGGCGTGCGCGAGCTGACCGCGCCCGAGCTGACGGGTGAATGGGAGTACAAGCTGTCGCAGATGGAGCGCGGCAA CCTTCCGCGCGACGCGTTCATGCAGGAAATCGCGCGCATGACGCAGACCATCGTCAAGCGCGCCAAGGAATACGATTCGG ACACGATCCCGGGCGACTACGCGACGCTCGAGACGCCATGCCCGAACTGCGGCGGCCAGGTGAAGGAGAACTATCGCCGC TTCGCCTGCACGAAGTGCGACTTCTCGATCTCGAAGATCCCGGGCAGCCGCCAGTTCGAGATCGCCGAGGTCGAGGAGCT GCTGCAGAAAAAGGAAATCGGCCCGCTGTCAGGCTTCCGCAGCAAGATGGGGCGGCCGTTCTCGGCGATCCTCAAGCTGT CGTTCGACGACGAGACGAAGAACTACAAGCTCGAGTTCGATTTCGGTCAGGACCAGGGCGGCGAGGACGGCGAGGCGCCC GACTTCTCGACGCAGGAGCCGGTGGGCGCCTGCCCGAAGTGCCAGGCTCGCGTGTTCGAGCACGGCATGAGCTATGTTTG CGAGAACTCGGTCGCGAACCCGAAGACCTGCGACTTCCGCTCCGGCAAGGTGATCCTGCAGCAGGAAATCGCGCGCGAGC AGATGGCGAAACTGCTGTCCGACGGCCGTACCGACCTGCTGCCGAACTTCAAGTCGTCGCGCACCGGCCGCAACTTCAAG GCGTTCCTCGTCAAGCAGCCGGACGGCAAGATCGGCTTCGAGTTCGAGAAGAAGGAGCCGAAGCCCGGCGCGGCCGCGAA GAAGACCGCGGCCAGGGCCGCTGCGAACGAGGACGGTGCCGCGCGCGAGACGGAAGACGGCGCCGCGCCGGCCGGCAAGA CCGCCGCGAAAAAGGCGCCGGCCGCCAAGAAGGCACCGGCGGCGAAAAAAGCACCGGCCGCGAAAAAGACGCCGGCTCGC AAGACCGGCTCCTAA
Upstream 100 bases:
>100_bases CTTTTTACACGAGCCGCGTGACAGGCCGGCGCCGTATGCTATAAAGCCGTCGTAAATGGGCCGTCAGGCGGCCCTCCGGT CTACCCAACCAACACGAGTC
Downstream 100 bases:
>100_bases TGGGCGCAGCAGGGCGCCGCGCGCGGCGCCCTGCTGCAACGCGCGGTGCCCTCGCCGGCGGTTTCCGCCGCCTCGCCGAC CGACGCCATGAAAAAACGCA
Product: DNA topoisomerase III
Products: NA
Alternate protein names: DNA topoisomerase III [H]
Number of amino acids: Translated: 884; Mature: 883
Protein sequence:
>884_residues MSKALIIAEKPSVANDIARALGGFTKHDEYFESDEYVLSSAVGHLLEIAAPEEYEVKRGKWSFAHLPVIPPHFDLNPIAK SESRLKVLTKLIKRKDVDLLINACDAGREGELIFRLIAQHAKAKQPVRRLWLQSMTPAAIRDGFAKLRSDEDMQPLADAA RCRSEADWLVGINGTRAMTAFNSKGGGFFLTTVGRVQTPTLSIVVEREEKIRRFVPRDYWEVRAEFVCAGGFYEGRWYDP KFKRDEHDPEKRDSRLWSLPAAETIVAACRGQIGVVSEESKPSTQLSPLLYDLTSLQREANSRFGFSAKNTLGLAQALYE KHKVLTYPRTDARALPEDYLGTVKSTLEMLKESNNYLPHAKQVLDKGWVKPNKRIFDNTKISDHFAIIPTLQAPKALSEP EQKLYDLVVKRFLAVFFPAAEYKVTTRITEVAGHHFKTEGKVLVEPGWLQVYGRDAEGADANLVPVQKDEKVKTDKIAAH ALVTKPPARYSEATLLSAMEGAGKLVEDDELREAMAAKGLGTPATRAAIIEGLLGEKYLLREGRELIPTAKAFQLMTLLR GLGVRELTAPELTGEWEYKLSQMERGNLPRDAFMQEIARMTQTIVKRAKEYDSDTIPGDYATLETPCPNCGGQVKENYRR FACTKCDFSISKIPGSRQFEIAEVEELLQKKEIGPLSGFRSKMGRPFSAILKLSFDDETKNYKLEFDFGQDQGGEDGEAP DFSTQEPVGACPKCQARVFEHGMSYVCENSVANPKTCDFRSGKVILQQEIAREQMAKLLSDGRTDLLPNFKSSRTGRNFK AFLVKQPDGKIGFEFEKKEPKPGAAAKKTAARAAANEDGAARETEDGAAPAGKTAAKKAPAAKKAPAAKKAPAAKKTPAR KTGS
Sequences:
>Translated_884_residues MSKALIIAEKPSVANDIARALGGFTKHDEYFESDEYVLSSAVGHLLEIAAPEEYEVKRGKWSFAHLPVIPPHFDLNPIAK SESRLKVLTKLIKRKDVDLLINACDAGREGELIFRLIAQHAKAKQPVRRLWLQSMTPAAIRDGFAKLRSDEDMQPLADAA RCRSEADWLVGINGTRAMTAFNSKGGGFFLTTVGRVQTPTLSIVVEREEKIRRFVPRDYWEVRAEFVCAGGFYEGRWYDP KFKRDEHDPEKRDSRLWSLPAAETIVAACRGQIGVVSEESKPSTQLSPLLYDLTSLQREANSRFGFSAKNTLGLAQALYE KHKVLTYPRTDARALPEDYLGTVKSTLEMLKESNNYLPHAKQVLDKGWVKPNKRIFDNTKISDHFAIIPTLQAPKALSEP EQKLYDLVVKRFLAVFFPAAEYKVTTRITEVAGHHFKTEGKVLVEPGWLQVYGRDAEGADANLVPVQKDEKVKTDKIAAH ALVTKPPARYSEATLLSAMEGAGKLVEDDELREAMAAKGLGTPATRAAIIEGLLGEKYLLREGRELIPTAKAFQLMTLLR GLGVRELTAPELTGEWEYKLSQMERGNLPRDAFMQEIARMTQTIVKRAKEYDSDTIPGDYATLETPCPNCGGQVKENYRR FACTKCDFSISKIPGSRQFEIAEVEELLQKKEIGPLSGFRSKMGRPFSAILKLSFDDETKNYKLEFDFGQDQGGEDGEAP DFSTQEPVGACPKCQARVFEHGMSYVCENSVANPKTCDFRSGKVILQQEIAREQMAKLLSDGRTDLLPNFKSSRTGRNFK AFLVKQPDGKIGFEFEKKEPKPGAAAKKTAARAAANEDGAARETEDGAAPAGKTAAKKAPAAKKAPAAKKAPAAKKTPAR KTGS >Mature_883_residues SKALIIAEKPSVANDIARALGGFTKHDEYFESDEYVLSSAVGHLLEIAAPEEYEVKRGKWSFAHLPVIPPHFDLNPIAKS ESRLKVLTKLIKRKDVDLLINACDAGREGELIFRLIAQHAKAKQPVRRLWLQSMTPAAIRDGFAKLRSDEDMQPLADAAR CRSEADWLVGINGTRAMTAFNSKGGGFFLTTVGRVQTPTLSIVVEREEKIRRFVPRDYWEVRAEFVCAGGFYEGRWYDPK FKRDEHDPEKRDSRLWSLPAAETIVAACRGQIGVVSEESKPSTQLSPLLYDLTSLQREANSRFGFSAKNTLGLAQALYEK HKVLTYPRTDARALPEDYLGTVKSTLEMLKESNNYLPHAKQVLDKGWVKPNKRIFDNTKISDHFAIIPTLQAPKALSEPE QKLYDLVVKRFLAVFFPAAEYKVTTRITEVAGHHFKTEGKVLVEPGWLQVYGRDAEGADANLVPVQKDEKVKTDKIAAHA LVTKPPARYSEATLLSAMEGAGKLVEDDELREAMAAKGLGTPATRAAIIEGLLGEKYLLREGRELIPTAKAFQLMTLLRG LGVRELTAPELTGEWEYKLSQMERGNLPRDAFMQEIARMTQTIVKRAKEYDSDTIPGDYATLETPCPNCGGQVKENYRRF ACTKCDFSISKIPGSRQFEIAEVEELLQKKEIGPLSGFRSKMGRPFSAILKLSFDDETKNYKLEFDFGQDQGGEDGEAPD FSTQEPVGACPKCQARVFEHGMSYVCENSVANPKTCDFRSGKVILQQEIAREQMAKLLSDGRTDLLPNFKSSRTGRNFKA FLVKQPDGKIGFEFEKKEPKPGAAAKKTAARAAANEDGAARETEDGAAPAGKTAAKKAPAAKKAPAAKKAPAAKKTPARK TGS
Specific function: The reaction catalyzed by topoisomerases leads to the conversion of one topological isomer of DNA to another. TOP3 is a potent decatenase [H]
COG id: COG0550
COG function: function code L; Topoisomerase IA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Homo sapiens, GI10835218, Length=649, Percent_Identity=25.4237288135593, Blast_Score=137, Evalue=6e-32, Organism=Homo sapiens, GI4507635, Length=703, Percent_Identity=23.4708392603129, Blast_Score=120, Evalue=7e-27, Organism=Escherichia coli, GI1788061, Length=620, Percent_Identity=33.8709677419355, Blast_Score=323, Evalue=3e-89, Organism=Escherichia coli, GI1787529, Length=667, Percent_Identity=25.4872563718141, Blast_Score=149, Evalue=9e-37, Organism=Caenorhabditis elegans, GI32563869, Length=626, Percent_Identity=25.2396166134185, Blast_Score=130, Evalue=2e-30, Organism=Caenorhabditis elegans, GI17555378, Length=634, Percent_Identity=23.9747634069401, Blast_Score=104, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6323263, Length=665, Percent_Identity=25.5639097744361, Blast_Score=108, Evalue=5e-24, Organism=Drosophila melanogaster, GI24585251, Length=638, Percent_Identity=25.705329153605, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI24640096, Length=645, Percent_Identity=22.6356589147287, Blast_Score=101, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003601 - InterPro: IPR013497 - InterPro: IPR013824 - InterPro: IPR013825 - InterPro: IPR000380 - InterPro: IPR003602 - InterPro: IPR005738 - InterPro: IPR006171 [H]
Pfam domain/function: PF01131 Topoisom_bac; PF01751 Toprim [H]
EC number: =5.99.1.2 [H]
Molecular weight: Translated: 98030; Mature: 97899
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: PS00396 TOPOISOMERASE_I_PROK
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKALIIAEKPSVANDIARALGGFTKHDEYFESDEYVLSSAVGHLLEIAAPEEYEVKRGK CCCEEEEECCCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHCCCC WSFAHLPVIPPHFDLNPIAKSESRLKVLTKLIKRKDVDLLINACDAGREGELIFRLIAQH EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHEEECCCCCCCCHHHHHHHHHH AKAKQPVRRLWLQSMTPAAIRDGFAKLRSDEDMQPLADAARCRSEADWLVGINGTRAMTA HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEECCCCEEEEE FNSKGGGFFLTTVGRVQTPTLSIVVEREEKIRRFVPRDYWEVRAEFVCAGGFYEGRWYDP ECCCCCCEEEEECCCCCCCEEEEEECCHHHHHHHCCCHHHHHHHHEEEECCCCCCCEECC KFKRDEHDPEKRDSRLWSLPAAETIVAACRGQIGVVSEESKPSTQLSPLLYDLTSLQREA CCCCCCCCHHHHHCCEECCCHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHH NSRFGFSAKNTLGLAQALYEKHKVLTYPRTDARALPEDYLGTVKSTLEMLKESNNYLPHA CCCCCCCCHHHHHHHHHHHHHHCEEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCHH KQVLDKGWVKPNKRIFDNTKISDHFAIIPTLQAPKALSEPEQKLYDLVVKRFLAVFFPAA HHHHHHCCCCCCCEECCCCCCCCCEEEEECCCCCHHCCCHHHHHHHHHHHHHHHHHCCCC EYKVTTRITEVAGHHFKTEGKVLVEPGWLQVYGRDAEGADANLVPVQKDEKVKTDKIAAH CEEHHHHHHHHHCCCCCCCCEEEECCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHH ALVTKPPARYSEATLLSAMEGAGKLVEDDELREAMAAKGLGTPATRAAIIEGLLGEKYLL HHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHH REGRELIPTAKAFQLMTLLRGLGVRELTAPELTGEWEYKLSQMERGNLPRDAFMQEIARM HCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH TQTIVKRAKEYDSDTIPGDYATLETPCPNCGGQVKENYRRFACTKCDFSISKIPGSRQFE HHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCCHHCCCCCCCEE IAEVEELLQKKEIGPLSGFRSKMGRPFSAILKLSFDDETKNYKLEFDFGQDQGGEDGEAP HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHEEEEECCCCCCEEEEEECCCCCCCCCCCCC DFSTQEPVGACPKCQARVFEHGMSYVCENSVANPKTCDFRSGKVILQQEIAREQMAKLLS CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH DGRTDLLPNFKSSRTGRNFKAFLVKQPDGKIGFEFEKKEPKPGAAAKKTAARAAANEDGA CCCHHCCCCCCCCCCCCCEEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCC ARETEDGAAPAGKTAAKKAPAAKKAPAAKKAPAAKKTPARKTGS CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SKALIIAEKPSVANDIARALGGFTKHDEYFESDEYVLSSAVGHLLEIAAPEEYEVKRGK CCEEEEECCCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHCCCC WSFAHLPVIPPHFDLNPIAKSESRLKVLTKLIKRKDVDLLINACDAGREGELIFRLIAQH EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHEEECCCCCCCCHHHHHHHHHH AKAKQPVRRLWLQSMTPAAIRDGFAKLRSDEDMQPLADAARCRSEADWLVGINGTRAMTA HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEECCCCEEEEE FNSKGGGFFLTTVGRVQTPTLSIVVEREEKIRRFVPRDYWEVRAEFVCAGGFYEGRWYDP ECCCCCCEEEEECCCCCCCEEEEEECCHHHHHHHCCCHHHHHHHHEEEECCCCCCCEECC KFKRDEHDPEKRDSRLWSLPAAETIVAACRGQIGVVSEESKPSTQLSPLLYDLTSLQREA CCCCCCCCHHHHHCCEECCCHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHH NSRFGFSAKNTLGLAQALYEKHKVLTYPRTDARALPEDYLGTVKSTLEMLKESNNYLPHA CCCCCCCCHHHHHHHHHHHHHHCEEECCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCHH KQVLDKGWVKPNKRIFDNTKISDHFAIIPTLQAPKALSEPEQKLYDLVVKRFLAVFFPAA HHHHHHCCCCCCCEECCCCCCCCCEEEEECCCCCHHCCCHHHHHHHHHHHHHHHHHCCCC EYKVTTRITEVAGHHFKTEGKVLVEPGWLQVYGRDAEGADANLVPVQKDEKVKTDKIAAH CEEHHHHHHHHHCCCCCCCCEEEECCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHH ALVTKPPARYSEATLLSAMEGAGKLVEDDELREAMAAKGLGTPATRAAIIEGLLGEKYLL HHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHH REGRELIPTAKAFQLMTLLRGLGVRELTAPELTGEWEYKLSQMERGNLPRDAFMQEIARM HCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH TQTIVKRAKEYDSDTIPGDYATLETPCPNCGGQVKENYRRFACTKCDFSISKIPGSRQFE HHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCCHHCCCCCCCEE IAEVEELLQKKEIGPLSGFRSKMGRPFSAILKLSFDDETKNYKLEFDFGQDQGGEDGEAP HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHEEEEECCCCCCEEEEEECCCCCCCCCCCCC DFSTQEPVGACPKCQARVFEHGMSYVCENSVANPKTCDFRSGKVILQQEIAREQMAKLLS CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH DGRTDLLPNFKSSRTGRNFKAFLVKQPDGKIGFEFEKKEPKPGAAAKKTAARAAANEDGA CCCHHCCCCCCCCCCCCCEEEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCC ARETEDGAAPAGKTAAKKAPAAKKAPAAKKAPAAKKTPARKTGS CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA