| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ntrY [H]
Identifier: 238028939
GI number: 238028939
Start: 3868026
End: 3870437
Strand: Reverse
Name: ntrY [H]
Synonym: bglu_1g34040
Alternate gene names: 238028939
Gene position: 3870437-3868026 (Counterclockwise)
Preceding gene: 238028940
Following gene: 238028938
Centisome position: 99.08
GC content: 68.24
Gene sequence:
>2412_bases ATGCGAAATAGCCTGCGCCGGCTCGTGTTCGGCAAGAGCCTGATCGTGCGCGTGATCGTCCTCACGGTGGCGATCACGGC GCTGCTGCTGCTGGTGCTGCTGGCGGCCGCGAGCGCCAATACCGAGTTCTTCGACCGCTACTATTCATGGCTCTACACGG CCAACATCCTGGTCGCGCTGGTGTTCCTGCTGGTGGTGATGGCGCTCGTCGGGATGATCTTCGTGCGGCTGCGGCGCGGC AAGTTCGGCACGCGGCTGCTGGCCAAGCTCGCCGTGTTCTTCGCGCTGGTCGGCGTGGTGCCGGGCGGGATCATCTACAT CGTGTCGTACCAGTTCGTCTCGCGCAGCATCGAGTCGTGGTTCGACGTCAACGTCGAGACCGCGCTGACGGCGGGCCTCA ACCTGGGCCGCGGCATGCTCGACGCGTCGCTGTCGGACCTGCAGACCAAGGCGCGGCTGATGTCCGAGCAGCTGGCGAGC GCGGACGCCACCACCAACGGCACCACGCTCACGCTGCTGCGGCTGCGCGACCAGTTCGGCGTGCAGGACGCGACCATCGT CGAGCCGGGCCACACCGGCTCGGGCGCGGCGCCCGACCTGCACATCGTGGCGCAGGCCTCGGGCAATTTCGCCGCGCTGA TCCCCGACGACATGCCGACCTCGCTGATGCTCGGCCAGGCGCGCGAGCATGGCGGCTACGCGGCGATCGAGGGCGAGGTG GACGGCGATCCGCGCGCGCGCGGATCGAAGGGCGCGCTGCGGCTGCGCGTGGTGCAGCGCATCCCCGATTCGTCGACGGC GCTGCTGCAGCCGGTCGAGCGCTACCTGCAGCTGACGCAGCCGGTCCCGCCCTCGCTCGCGCGCAACGCCGATGCGGTGC AGCGCGCCTACCGCGAGTACCAGGAGAAGTCGCTCGGCCGCAGCGGGCTGCGCAAGATGTACATCGGCACGCTGACGCTC GCGCTGTTCCTCGCCACCTTCATCGCGATGATGATCGCGCTCGCGCTCGGCAACCAGCTCGCGCGGCCGCTGTTCCTGCT CGCGCAGGGCACCAAGGAGGTGGCCGAGGGCGACTACACGCCCAAGCGCGAACTGAAGACGCGCGACGAGCTCGGCTTCC TCACCCAGTCGTTCAACGCGATGACGCGGCAGCTCTCCGAGGCGCGGCTCGCCGTGGAGCGCAACCGCGTCGCGCTCGAA CATTCGAAAGCCTACCTCGAGAGCATCCTCGCCAACCTGACGGCCGGCGTGTTCGTGCTCGACCGGCAGTTCCGGCTGAC CATCGCGAACCGCGGTGCCGAGCGGATCTTCCGTCAGCCGTTCCAGGCGCAGATCGGCACCGCGCTCGACCGCATCGTGG TGGTGGCCGAGTTCGGCGCGATGGTGAGGAAGGCGTTCGCCGATCGCGAGGCGGCGGGCCAGGGCGGCGGCGAGGATCGC GGCCACTGGCAGCAGCAGTTCGCGGTGGTGGTGCCGGACGAAACCGACCCGCTCACGCTGCTGGTACGGGGCACGCGTCT TGCGTCATCGGTGGCGGGCGAGGCCCACGATCCGCAGACCTCGGGCTACGTCGTGGTGTTCGACGACATCTCCGACGTGA TCTCGGCGCAGCGCTCGGTGGCCTGGGGCGAGGTCGCGCGGCGCCTCGCGCACGAGATCAAGAATCCGCTCACGCCGATC CAGCTGTCGGCCGAGCGGCTGCAGATGAAGCTGGCCGACAAGCTCGCCGCGCCCGACGCCGAGGTGCTCAAGCGCGGCGC GACCACCATCGTCAATCAGGTGGCGGCGATGAAGCGCATGGTCGATGATTTTCGCGAATATGCGCGCACGCCGCCCGCGG TGCTCGGCAACCTGCAACTGAACGATCTCGTCAGCGAGGTGCTGACGCTGTACGGTGTGGGCGAAGGCAAGAACATGATC GTGGTCGAGCAGGGGCCGCTGCCGGTGATTCGCGGCGACGCCACGCAACTGCGCCAGGTGATCCACAACCTGCTGCAGAA TGCGCAGGATTCGGTGGGCGAGGTCGCGCAGCCCCGTGTGTTGCTCGAAACGAGGGCAGTAGAATATGGCGATCCCGATG CGAACGGCACGAAGCGCATCGCGGTGCGGCTGACGGTGTCCGACAATGGTCCCGGCTTCCCGGCGCGTATCCTCACGCGC GCGTTCGAGCCGTACGTGACGACCAAGGCGAAGGGCACCGGGCTCGGTCTCGCAACGGTGAAGAAGATCGTTGACGAACA CGGGGCGCGGATCGATCTGCGCAACCGGATGCAGGGCGAGGTCGTCGAGGGGGCGCAGGTGTCGATCCTGTTCCTGCAAC TCGCCGACGACACGACAGGCTCCGAGGGTGGAGCGGACAGCGCAACGGCACCCGCCAAGACAAAAGCAGCAGTGCAGACA AGGGCAGCGTAA
Upstream 100 bases:
>100_bases ACGGCGCTGATGCCCAAGCCGTTCCAGGTCGATGCGGTGAACAACCGCGACTGGAGCCTGGTGTCCGAGTGGAAGCGCTT CACCTTCACGGTGGCCGATC
Downstream 100 bases:
>100_bases ATGGCAACCATCCTGGTGGTAGATGATGAAATGGGCATCCGGGAATTGCTCTCGGAAATCCTCGCCGACGAAGGACACGT CGTCGAGGTGGCGGAAAACG
Product: sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 803; Mature: 803
Protein sequence:
>803_residues MRNSLRRLVFGKSLIVRVIVLTVAITALLLLVLLAAASANTEFFDRYYSWLYTANILVALVFLLVVMALVGMIFVRLRRG KFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSEQLAS ADATTNGTTLTLLRLRDQFGVQDATIVEPGHTGSGAAPDLHIVAQASGNFAALIPDDMPTSLMLGQAREHGGYAAIEGEV DGDPRARGSKGALRLRVVQRIPDSSTALLQPVERYLQLTQPVPPSLARNADAVQRAYREYQEKSLGRSGLRKMYIGTLTL ALFLATFIAMMIALALGNQLARPLFLLAQGTKEVAEGDYTPKRELKTRDELGFLTQSFNAMTRQLSEARLAVERNRVALE HSKAYLESILANLTAGVFVLDRQFRLTIANRGAERIFRQPFQAQIGTALDRIVVVAEFGAMVRKAFADREAAGQGGGEDR GHWQQQFAVVVPDETDPLTLLVRGTRLASSVAGEAHDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPI QLSAERLQMKLADKLAAPDAEVLKRGATTIVNQVAAMKRMVDDFREYARTPPAVLGNLQLNDLVSEVLTLYGVGEGKNMI VVEQGPLPVIRGDATQLRQVIHNLLQNAQDSVGEVAQPRVLLETRAVEYGDPDANGTKRIAVRLTVSDNGPGFPARILTR AFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMQGEVVEGAQVSILFLQLADDTTGSEGGADSATAPAKTKAAVQT RAA
Sequences:
>Translated_803_residues MRNSLRRLVFGKSLIVRVIVLTVAITALLLLVLLAAASANTEFFDRYYSWLYTANILVALVFLLVVMALVGMIFVRLRRG KFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSEQLAS ADATTNGTTLTLLRLRDQFGVQDATIVEPGHTGSGAAPDLHIVAQASGNFAALIPDDMPTSLMLGQAREHGGYAAIEGEV DGDPRARGSKGALRLRVVQRIPDSSTALLQPVERYLQLTQPVPPSLARNADAVQRAYREYQEKSLGRSGLRKMYIGTLTL ALFLATFIAMMIALALGNQLARPLFLLAQGTKEVAEGDYTPKRELKTRDELGFLTQSFNAMTRQLSEARLAVERNRVALE HSKAYLESILANLTAGVFVLDRQFRLTIANRGAERIFRQPFQAQIGTALDRIVVVAEFGAMVRKAFADREAAGQGGGEDR GHWQQQFAVVVPDETDPLTLLVRGTRLASSVAGEAHDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPI QLSAERLQMKLADKLAAPDAEVLKRGATTIVNQVAAMKRMVDDFREYARTPPAVLGNLQLNDLVSEVLTLYGVGEGKNMI VVEQGPLPVIRGDATQLRQVIHNLLQNAQDSVGEVAQPRVLLETRAVEYGDPDANGTKRIAVRLTVSDNGPGFPARILTR AFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMQGEVVEGAQVSILFLQLADDTTGSEGGADSATAPAKTKAAVQT RAA >Mature_803_residues MRNSLRRLVFGKSLIVRVIVLTVAITALLLLVLLAAASANTEFFDRYYSWLYTANILVALVFLLVVMALVGMIFVRLRRG KFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSEQLAS ADATTNGTTLTLLRLRDQFGVQDATIVEPGHTGSGAAPDLHIVAQASGNFAALIPDDMPTSLMLGQAREHGGYAAIEGEV DGDPRARGSKGALRLRVVQRIPDSSTALLQPVERYLQLTQPVPPSLARNADAVQRAYREYQEKSLGRSGLRKMYIGTLTL ALFLATFIAMMIALALGNQLARPLFLLAQGTKEVAEGDYTPKRELKTRDELGFLTQSFNAMTRQLSEARLAVERNRVALE HSKAYLESILANLTAGVFVLDRQFRLTIANRGAERIFRQPFQAQIGTALDRIVVVAEFGAMVRKAFADREAAGQGGGEDR GHWQQQFAVVVPDETDPLTLLVRGTRLASSVAGEAHDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPI QLSAERLQMKLADKLAAPDAEVLKRGATTIVNQVAAMKRMVDDFREYARTPPAVLGNLQLNDLVSEVLTLYGVGEGKNMI VVEQGPLPVIRGDATQLRQVIHNLLQNAQDSVGEVAQPRVLLETRAVEYGDPDANGTKRIAVRLTVSDNGPGFPARILTR AFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMQGEVVEGAQVSILFLQLADDTTGSEGGADSATAPAKTKAAVQT RAA
Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]
COG id: COG5000
COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=401, Percent_Identity=23.9401496259352, Blast_Score=94, Evalue=4e-20, Organism=Escherichia coli, GI1790436, Length=220, Percent_Identity=30.9090909090909, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1790300, Length=356, Percent_Identity=24.7191011235955, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1786912, Length=219, Percent_Identity=28.7671232876712, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR017232 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 87100; Mature: 87100
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNSLRRLVFGKSLIVRVIVLTVAITALLLLVLLAAASANTEFFDRYYSWLYTANILVAL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH VFLLVVMALVGMIFVRLRRGKFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESW HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHH FDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSEQLASADATTNGTTLTLLRLRDQFG HCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHC VQDATIVEPGHTGSGAAPDLHIVAQASGNFAALIPDDMPTSLMLGQAREHGGYAAIEGEV CCCCEEECCCCCCCCCCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCC DGDPRARGSKGALRLRVVQRIPDSSTALLQPVERYLQLTQPVPPSLARNADAVQRAYREY CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHH QEKSLGRSGLRKMYIGTLTLALFLATFIAMMIALALGNQLARPLFLLAQGTKEVAEGDYT HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC PKRELKTRDELGFLTQSFNAMTRQLSEARLAVERNRVALEHSKAYLESILANLTAGVFVL CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE DRQFRLTIANRGAERIFRQPFQAQIGTALDRIVVVAEFGAMVRKAFADREAAGQGGGEDR CCCEEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GHWQQQFAVVVPDETDPLTLLVRGTRLASSVAGEAHDPQTSGYVVVFDDISDVISAQRSV CHHHHCEEEEECCCCCCEEEEEECHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHH AWGEVARRLAHEIKNPLTPIQLSAERLQMKLADKLAAPDAEVLKRGATTIVNQVAAMKRM HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHH VDDFREYARTPPAVLGNLQLNDLVSEVLTLYGVGEGKNMIVVEQGPLPVIRGDATQLRQV HHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCHHHHHHH IHNLLQNAQDSVGEVAQPRVLLETRAVEYGDPDANGTKRIAVRLTVSDNGPGFPARILTR HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHH AFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMQGEVVEGAQVSILFLQLADDTTG HHCCCEECCCCCCCCHHHHHHHHHHHCCCEEEHHHCCCCCCCCCCEEEEEEEEEECCCCC SEGGADSATAPAKTKAAVQTRAA CCCCCCCCCCCCHHHHHHHHCCC >Mature Secondary Structure MRNSLRRLVFGKSLIVRVIVLTVAITALLLLVLLAAASANTEFFDRYYSWLYTANILVAL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH VFLLVVMALVGMIFVRLRRGKFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESW HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHH FDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSEQLASADATTNGTTLTLLRLRDQFG HCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHC VQDATIVEPGHTGSGAAPDLHIVAQASGNFAALIPDDMPTSLMLGQAREHGGYAAIEGEV CCCCEEECCCCCCCCCCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCC DGDPRARGSKGALRLRVVQRIPDSSTALLQPVERYLQLTQPVPPSLARNADAVQRAYREY CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHH QEKSLGRSGLRKMYIGTLTLALFLATFIAMMIALALGNQLARPLFLLAQGTKEVAEGDYT HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC PKRELKTRDELGFLTQSFNAMTRQLSEARLAVERNRVALEHSKAYLESILANLTAGVFVL CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE DRQFRLTIANRGAERIFRQPFQAQIGTALDRIVVVAEFGAMVRKAFADREAAGQGGGEDR CCCEEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GHWQQQFAVVVPDETDPLTLLVRGTRLASSVAGEAHDPQTSGYVVVFDDISDVISAQRSV CHHHHCEEEEECCCCCCEEEEEECHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHH AWGEVARRLAHEIKNPLTPIQLSAERLQMKLADKLAAPDAEVLKRGATTIVNQVAAMKRM HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHH VDDFREYARTPPAVLGNLQLNDLVSEVLTLYGVGEGKNMIVVEQGPLPVIRGDATQLRQV HHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCHHHHHHH IHNLLQNAQDSVGEVAQPRVLLETRAVEYGDPDANGTKRIAVRLTVSDNGPGFPARILTR HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHH AFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMQGEVVEGAQVSILFLQLADDTTG HHCCCEECCCCCCCCHHHHHHHHHHHCCCEEEHHHCCCCCCCCCCEEEEEEEEEECCCCC SEGGADSATAPAKTKAAVQTRAA CCCCCCCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1661370 [H]