| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yfgC [C]
Identifier: 238028921
GI number: 238028921
Start: 3848328
End: 3849281
Strand: Direct
Name: yfgC [C]
Synonym: bglu_1g33860
Alternate gene names: 238028921
Gene position: 3848328-3849281 (Clockwise)
Preceding gene: 238028920
Following gene: 238028923
Centisome position: 98.51
GC content: 75.79
Gene sequence:
>954_bases GTGCCGGCTGAGCGCGCGCGCAGCGCGCTGCTGGCGGGCGTGGCCGGGCTCGCGTGCGCGGCCGCGATGGCCGCCTCGCC CGCGCCGGCCGACTCCGCCGCGCCGCAGCCCGAGCATGAGGCCGCCTACGGGCAGCCGGCCGCCGGCATGCGCTACGGCA ACGCGTTCGCGTTCCGCAACCTGATCCCGTCGCCGGTGCTCGAGCAGATCACCGGCGCGCAGTACCAGCGGATGGTGCAG GCGGCCGCGCAGGCCGGCACGCTGATGGCGGCCGACGATGCACGCGTCAGGCGGCTGCGCACGCTGGTCGCGCGACTGGC GCCGTATGCGGTCAAGTGGAACGATCGCGTGAAGGACTGGCACTGGGACGTGAGCCTGGTGCGCAGCCGCGAGATCCGCG TGCTCGGCCTGCCGGGCGGCAAGCTGCTCGTCGACGGCGGCCTGCTCGCACGGCTGCGCCTGAACGACGACGAACTGGGC GTGCTGCTCGCGCACGAGATGGCGCACGCGCTGCGCGAGCACGCGCGCGCCTGCCTCGGCGACATGCCGCCCGCGGCGGC GCCCGGCGCGAACCCGATTTCCTCGCTGTACGGGCTGGCCGAGCCGCTGCCCGCGCCGCCCGCGATCGCCGAGCGGCTCG CCACGCTGCGCTACGGCGCCACCGACGAGACCGAGGCCGATGTGATCGGCGGCGACATCGCGGCCCGCGCCGGCATCGAC CCGCGCGCCGCGATCACGCTCTGGGGCAAGCTCTCGGCCGCCACCCGCGGCGACCGCCGGCGCGGCTTCATCTACTCGCA TCCCTATGACGCGCGCCGCCGCCAGGACCTGATGAAGCGGCTCGCCGACCTGATGCCGGTCTACGCGAAGGCGATCGGCA AGCGCGTCGAGGCCCTGCCGCCCTATGCCGGCATCGGCGCGGTGCGCCGCCGCCCCGCCTCGCCCGTCAGTTGA
Upstream 100 bases:
>100_bases TTCGACTATTTCCTGGTCTGCGCCATGCTCGGCATCCCGGGCCTGCTGCTGCTGTTCAAGGTCGCACCGTGGCGCAGCGG CGCACCCGACGAGGCCCCCC
Downstream 100 bases:
>100_bases TCTCGGCCGGCTCGCCGTTCACGACGAGGCCGTTGGCCTGCACCCAGCGGACCTCGTCGCCGGGGCTGCGGCCGAACATG CGCTTGAACTCGCGGCTGAA
Product: peptidase M48, Ste24p
Products: NA
Alternate protein names: M48 Family Peptidase; Lipoprotein; Zn-Dependent Protease With Chaperone Function; HtpX Protein; Peptidase M; Membrane-Associated Zinc Metalloprotease Peptidase; Zinc Metallopeptidase; Exported Peptidase; Signal Peptide; Peptidase Protein; Peptidase Family; Zn-Dependent Protease With Chaperone Function Protein; Signal Peptide Protein; M48 Family Zinc Metallopeptidase; Zinc Metalloprotease; M48-Family Peptidase
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MPAERARSALLAGVAGLACAAAMAASPAPADSAAPQPEHEAAYGQPAAGMRYGNAFAFRNLIPSPVLEQITGAQYQRMVQ AAAQAGTLMAADDARVRRLRTLVARLAPYAVKWNDRVKDWHWDVSLVRSREIRVLGLPGGKLLVDGGLLARLRLNDDELG VLLAHEMAHALREHARACLGDMPPAAAPGANPISSLYGLAEPLPAPPAIAERLATLRYGATDETEADVIGGDIAARAGID PRAAITLWGKLSAATRGDRRRGFIYSHPYDARRRQDLMKRLADLMPVYAKAIGKRVEALPPYAGIGAVRRRPASPVS
Sequences:
>Translated_317_residues MPAERARSALLAGVAGLACAAAMAASPAPADSAAPQPEHEAAYGQPAAGMRYGNAFAFRNLIPSPVLEQITGAQYQRMVQ AAAQAGTLMAADDARVRRLRTLVARLAPYAVKWNDRVKDWHWDVSLVRSREIRVLGLPGGKLLVDGGLLARLRLNDDELG VLLAHEMAHALREHARACLGDMPPAAAPGANPISSLYGLAEPLPAPPAIAERLATLRYGATDETEADVIGGDIAARAGID PRAAITLWGKLSAATRGDRRRGFIYSHPYDARRRQDLMKRLADLMPVYAKAIGKRVEALPPYAGIGAVRRRPASPVS >Mature_316_residues PAERARSALLAGVAGLACAAAMAASPAPADSAAPQPEHEAAYGQPAAGMRYGNAFAFRNLIPSPVLEQITGAQYQRMVQA AAQAGTLMAADDARVRRLRTLVARLAPYAVKWNDRVKDWHWDVSLVRSREIRVLGLPGGKLLVDGGLLARLRLNDDELGV LLAHEMAHALREHARACLGDMPPAAAPGANPISSLYGLAEPLPAPPAIAERLATLRYGATDETEADVIGGDIAARAGIDP RAAITLWGKLSAATRGDRRRGFIYSHPYDARRRQDLMKRLADLMPVYAKAIGKRVEALPPYAGIGAVRRRPASPVS
Specific function: Unknown
COG id: COG0501
COG function: function code O; Zn-dependent protease with chaperone function
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33804; Mature: 33673
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAERARSALLAGVAGLACAAAMAASPAPADSAAPQPEHEAAYGQPAAGMRYGNAFAFRN CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHH LIPSPVLEQITGAQYQRMVQAAAQAGTLMAADDARVRRLRTLVARLAPYAVKWNDRVKDW CCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCEEECCCCCCCH HWDVSLVRSREIRVLGLPGGKLLVDGGLLARLRLNDDELGVLLAHEMAHALREHARACLG HCCHHHCCCCCEEEEECCCCCEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC DMPPAAAPGANPISSLYGLAEPLPAPPAIAERLATLRYGATDETEADVIGGDIAARAGID CCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHCCCC PRAAITLWGKLSAATRGDRRRGFIYSHPYDARRRQDLMKRLADLMPVYAKAIGKRVEALP CCCEEEEHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PYAGIGAVRRRPASPVS CCCCCHHHHCCCCCCCC >Mature Secondary Structure PAERARSALLAGVAGLACAAAMAASPAPADSAAPQPEHEAAYGQPAAGMRYGNAFAFRN CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHH LIPSPVLEQITGAQYQRMVQAAAQAGTLMAADDARVRRLRTLVARLAPYAVKWNDRVKDW CCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCEEECCCCCCCH HWDVSLVRSREIRVLGLPGGKLLVDGGLLARLRLNDDELGVLLAHEMAHALREHARACLG HCCHHHCCCCCEEEEECCCCCEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC DMPPAAAPGANPISSLYGLAEPLPAPPAIAERLATLRYGATDETEADVIGGDIAARAGID CCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHCCCC PRAAITLWGKLSAATRGDRRRGFIYSHPYDARRRQDLMKRLADLMPVYAKAIGKRVEALP CCCEEEEHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PYAGIGAVRRRPASPVS CCCCCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA