| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yhdG [H]
Identifier: 238028879
GI number: 238028879
Start: 3803241
End: 3804641
Strand: Direct
Name: yhdG [H]
Synonym: bglu_1g33440
Alternate gene names: 238028879
Gene position: 3803241-3804641 (Clockwise)
Preceding gene: 238028878
Following gene: 238028881
Centisome position: 97.36
GC content: 67.88
Gene sequence:
>1401_bases ATGTCACTTCTTCGCAAGAAAAACGTCGACCAGATGATCGCCGGCGCGCAGCGCGCGGGGCTCAAGAAGGCGCTCGGCGC CCTCGATCTGACCTTCCTCGGAATCGGCGCCATCATCGGCACCGGGATCTTCGTGCTGACCGGCACGGGCGCCGTGCAGG CCGGCCCGGCGCTGATGGTGTCGTTCGTCGTCGCGGCGATCGCGTGCGGGCTGTCCGCGCTCGCCTACGCCGAGTTCGCC TCGACGATTCCGGTGGCCGGCTCGATCTACACCTATTCGTATGCCACGCTCGGCGAGCTGGTGGCCTGGATCATCGGCTG GGATCTGATGCTCGAATACAGCCTCGCGGCATCGGCCGTCTCGGTGGGCTGGTCGGGCTACCTGCAATCGCTGCTGAAGG GCTTCGGCGTGGTGCTGCCGGCCGTGCTCACCGCGGCGCCCGGTTCGGTGCCCGGCGTGACCACCTATTTCGACCTGCCG GCCTTCGCGGTGATGCTCGCGATCACCGCGCTGCTGTCGGTCGGCATCCGCGAATCGACGCGCGTGAACAACATCATGGT GTTCATCAAGATCGCCGTGGTGCTGCTGGTGATCGCGGTGGGCGTGTTCCACGTGACGCCGGCCAACTGGACGCCGTTCA TGCCGCACGGCTGGCAGGGCGTGTTCGGCGCCGCGGCCGTGATGTTCTTCGCGTTCATCGGCTTCGACGCGGTGTCCTCG GCGGCCGAGGAAGTGAAGAATCCGAAGCGCGACCTGCCGGTCGGCATCATCGCCTCGCTCGGCGTCTGCGCGGTGCTGTA CGTGGCCGTCGCGGCGGTGGCCACCGGCATCGTGCCGTCGGCCCAGTACGCGGGCATCACCCATCCGATCTCGTATGCGC TGCAGGTGGCCGGCCAGAAGTGGGTGGCCGGCTTCATCGACCTGGGCGCCGTGCTCGGCATGCTGACCGTGATCCTCGTG ATGACCTACGGCCAGACCCGCATCACCTACGCGATGTCGCGCGACGGGCTGCTGCCCGCGGTGCTCTCGCGCGTGCATCC GCGCTTCCAGACGCCGTTCGTCGCCACCTGGATCATCGGTCTGTTGTGCGCGCTGATCGCCGCGCTGATCCCGCTCAACG TGCTGGCCGAGCTGATCAACATCGGCACGCTGGCCGCGTTCTCGATGGTGTCGATCGCCGTGATCGTGCTGCGCCGCACG CGTCCGGACCTGCCGCGCGCGTTCCGCTGCCCGGGCGTGCCGACGGTGCCGATCCTGGCGGTCGCCGCGTGCCTGTTCCT GATGCTGAACCTGAACGCCGTCACCTGGAAGGCGTTCCTCATCTGGCTCGCGATCGGCCTGATCGTCTATTTCGCCTACT CGCGTCGCCACGCGAAGGTCGCGCACGGCGAGGCCCACTGA
Upstream 100 bases:
>100_bases CCCGAATGGGCAACCTGGATGGATCGGCTAGAATGCCAGGGCTCTAACGACTACAACCATAACCGCAGCCGTCGGCCGCA TTCTCTGCCTATCAATCCGC
Downstream 100 bases:
>100_bases GGTTTCGCTCGCCGCGGCTTCGACAAGCGGCGCGCCGGCGGTGGCGCGGGCCGTTACGACGACAGCCCCGCGATCAGCGC CGCCGCGATCGACGCGCCGA
Product: putative amino-acid transporter transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 466; Mature: 465
Protein sequence:
>466_residues MSLLRKKNVDQMIAGAQRAGLKKALGALDLTFLGIGAIIGTGIFVLTGTGAVQAGPALMVSFVVAAIACGLSALAYAEFA STIPVAGSIYTYSYATLGELVAWIIGWDLMLEYSLAASAVSVGWSGYLQSLLKGFGVVLPAVLTAAPGSVPGVTTYFDLP AFAVMLAITALLSVGIRESTRVNNIMVFIKIAVVLLVIAVGVFHVTPANWTPFMPHGWQGVFGAAAVMFFAFIGFDAVSS AAEEVKNPKRDLPVGIIASLGVCAVLYVAVAAVATGIVPSAQYAGITHPISYALQVAGQKWVAGFIDLGAVLGMLTVILV MTYGQTRITYAMSRDGLLPAVLSRVHPRFQTPFVATWIIGLLCALIAALIPLNVLAELINIGTLAAFSMVSIAVIVLRRT RPDLPRAFRCPGVPTVPILAVAACLFLMLNLNAVTWKAFLIWLAIGLIVYFAYSRRHAKVAHGEAH
Sequences:
>Translated_466_residues MSLLRKKNVDQMIAGAQRAGLKKALGALDLTFLGIGAIIGTGIFVLTGTGAVQAGPALMVSFVVAAIACGLSALAYAEFA STIPVAGSIYTYSYATLGELVAWIIGWDLMLEYSLAASAVSVGWSGYLQSLLKGFGVVLPAVLTAAPGSVPGVTTYFDLP AFAVMLAITALLSVGIRESTRVNNIMVFIKIAVVLLVIAVGVFHVTPANWTPFMPHGWQGVFGAAAVMFFAFIGFDAVSS AAEEVKNPKRDLPVGIIASLGVCAVLYVAVAAVATGIVPSAQYAGITHPISYALQVAGQKWVAGFIDLGAVLGMLTVILV MTYGQTRITYAMSRDGLLPAVLSRVHPRFQTPFVATWIIGLLCALIAALIPLNVLAELINIGTLAAFSMVSIAVIVLRRT RPDLPRAFRCPGVPTVPILAVAACLFLMLNLNAVTWKAFLIWLAIGLIVYFAYSRRHAKVAHGEAH >Mature_465_residues SLLRKKNVDQMIAGAQRAGLKKALGALDLTFLGIGAIIGTGIFVLTGTGAVQAGPALMVSFVVAAIACGLSALAYAEFAS TIPVAGSIYTYSYATLGELVAWIIGWDLMLEYSLAASAVSVGWSGYLQSLLKGFGVVLPAVLTAAPGSVPGVTTYFDLPA FAVMLAITALLSVGIRESTRVNNIMVFIKIAVVLLVIAVGVFHVTPANWTPFMPHGWQGVFGAAAVMFFAFIGFDAVSSA AEEVKNPKRDLPVGIIASLGVCAVLYVAVAAVATGIVPSAQYAGITHPISYALQVAGQKWVAGFIDLGAVLGMLTVILVM TYGQTRITYAMSRDGLLPAVLSRVHPRFQTPFVATWIIGLLCALIAALIPLNVLAELINIGTLAAFSMVSIAVIVLRRTR PDLPRAFRCPGVPTVPILAVAACLFLMLNLNAVTWKAFLIWLAIGLIVYFAYSRRHAKVAHGEAH
Specific function: Probable Amino-Acid Or Metabolite Transport Protein. [C]
COG id: COG0531
COG function: function code E; Amino acid transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]
Homologues:
Organism=Homo sapiens, GI258645169, Length=426, Percent_Identity=34.7417840375587, Blast_Score=224, Evalue=1e-58, Organism=Homo sapiens, GI258614003, Length=426, Percent_Identity=33.8028169014084, Blast_Score=224, Evalue=2e-58, Organism=Homo sapiens, GI258614005, Length=426, Percent_Identity=33.8028169014084, Blast_Score=224, Evalue=2e-58, Organism=Homo sapiens, GI181337167, Length=410, Percent_Identity=36.5853658536585, Blast_Score=223, Evalue=4e-58, Organism=Homo sapiens, GI4507047, Length=436, Percent_Identity=34.4036697247706, Blast_Score=219, Evalue=3e-57, Organism=Homo sapiens, GI110347453, Length=407, Percent_Identity=36.8550368550369, Blast_Score=217, Evalue=2e-56, Organism=Homo sapiens, GI114326544, Length=431, Percent_Identity=33.6426914153132, Blast_Score=209, Evalue=3e-54, Organism=Homo sapiens, GI114326550, Length=431, Percent_Identity=33.6426914153132, Blast_Score=209, Evalue=3e-54, Organism=Homo sapiens, GI187423910, Length=483, Percent_Identity=25.6728778467909, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI7657591, Length=483, Percent_Identity=25.6728778467909, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI186910308, Length=417, Percent_Identity=24.220623501199, Blast_Score=86, Evalue=7e-17, Organism=Homo sapiens, GI186910306, Length=417, Percent_Identity=24.220623501199, Blast_Score=86, Evalue=7e-17, Organism=Homo sapiens, GI186910304, Length=417, Percent_Identity=24.220623501199, Blast_Score=86, Evalue=7e-17, Organism=Homo sapiens, GI33286428, Length=423, Percent_Identity=26.7139479905437, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI71979932, Length=456, Percent_Identity=26.5350877192982, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI115648063, Length=412, Percent_Identity=24.7572815533981, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI115648022, Length=412, Percent_Identity=24.7572815533981, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI7657683, Length=403, Percent_Identity=25.0620347394541, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI9790235, Length=361, Percent_Identity=24.6537396121884, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI87082023, Length=455, Percent_Identity=25.7142857142857, Blast_Score=99, Evalue=8e-22, Organism=Escherichia coli, GI1786302, Length=474, Percent_Identity=22.9957805907173, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI87081869, Length=454, Percent_Identity=22.9074889867841, Blast_Score=90, Evalue=4e-19, Organism=Escherichia coli, GI1788480, Length=466, Percent_Identity=24.2489270386266, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI87081915, Length=438, Percent_Identity=23.5159817351598, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1786602, Length=478, Percent_Identity=22.3849372384937, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1786789, Length=352, Percent_Identity=21.5909090909091, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI87081708, Length=478, Percent_Identity=21.7573221757322, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1786694, Length=253, Percent_Identity=26.8774703557312, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI87082250, Length=431, Percent_Identity=26.2180974477958, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1789017, Length=361, Percent_Identity=22.7146814404432, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI2367353, Length=346, Percent_Identity=26.5895953757225, Blast_Score=71, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17532491, Length=416, Percent_Identity=36.7788461538462, Blast_Score=250, Evalue=1e-66, Organism=Caenorhabditis elegans, GI17531343, Length=411, Percent_Identity=36.9829683698297, Blast_Score=221, Evalue=8e-58, Organism=Caenorhabditis elegans, GI17533459, Length=409, Percent_Identity=35.4523227383863, Blast_Score=218, Evalue=7e-57, Organism=Caenorhabditis elegans, GI17540018, Length=453, Percent_Identity=24.9448123620309, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17568033, Length=427, Percent_Identity=25.2927400468384, Blast_Score=88, Evalue=9e-18, Organism=Caenorhabditis elegans, GI32566695, Length=441, Percent_Identity=26.984126984127, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI193208714, Length=441, Percent_Identity=26.984126984127, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17537453, Length=394, Percent_Identity=24.3654822335025, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71982612, Length=411, Percent_Identity=23.1143552311436, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71982608, Length=411, Percent_Identity=23.1143552311436, Blast_Score=75, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71993915, Length=418, Percent_Identity=22.7272727272727, Blast_Score=66, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6319991, Length=347, Percent_Identity=27.6657060518732, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI221512776, Length=416, Percent_Identity=38.4615384615385, Blast_Score=278, Evalue=8e-75, Organism=Drosophila melanogaster, GI24666159, Length=416, Percent_Identity=38.4615384615385, Blast_Score=277, Evalue=1e-74, Organism=Drosophila melanogaster, GI24667468, Length=406, Percent_Identity=36.9458128078818, Blast_Score=253, Evalue=3e-67, Organism=Drosophila melanogaster, GI24668806, Length=428, Percent_Identity=34.3457943925234, Blast_Score=242, Evalue=4e-64, Organism=Drosophila melanogaster, GI21356285, Length=428, Percent_Identity=34.3457943925234, Blast_Score=242, Evalue=4e-64, Organism=Drosophila melanogaster, GI24668802, Length=428, Percent_Identity=34.3457943925234, Blast_Score=242, Evalue=4e-64, Organism=Drosophila melanogaster, GI281366235, Length=412, Percent_Identity=34.9514563106796, Blast_Score=219, Evalue=4e-57, Organism=Drosophila melanogaster, GI116007820, Length=412, Percent_Identity=34.9514563106796, Blast_Score=219, Evalue=4e-57, Organism=Drosophila melanogaster, GI161077963, Length=428, Percent_Identity=36.4485981308411, Blast_Score=216, Evalue=3e-56, Organism=Drosophila melanogaster, GI116007818, Length=412, Percent_Identity=34.7087378640777, Blast_Score=215, Evalue=4e-56, Organism=Drosophila melanogaster, GI85725152, Length=412, Percent_Identity=34.7087378640777, Blast_Score=215, Evalue=4e-56, Organism=Drosophila melanogaster, GI21357367, Length=431, Percent_Identity=25.9860788863109, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24651635, Length=426, Percent_Identity=26.2910798122066, Blast_Score=92, Evalue=8e-19, Organism=Drosophila melanogaster, GI24651633, Length=426, Percent_Identity=26.2910798122066, Blast_Score=92, Evalue=8e-19, Organism=Drosophila melanogaster, GI221331183, Length=441, Percent_Identity=25.1700680272109, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI17647653, Length=441, Percent_Identity=25.1700680272109, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI24664379, Length=441, Percent_Identity=25.1700680272109, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI45550968, Length=465, Percent_Identity=24.0860215053763, Blast_Score=85, Evalue=9e-17, Organism=Drosophila melanogaster, GI19921172, Length=465, Percent_Identity=24.0860215053763, Blast_Score=85, Evalue=9e-17, Organism=Drosophila melanogaster, GI24641993, Length=401, Percent_Identity=23.9401496259352, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24641995, Length=405, Percent_Identity=26.1728395061728, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004841 - InterPro: IPR002293 - InterPro: IPR004758 - InterPro: IPR015606 [H]
Pfam domain/function: PF00324 AA_permease [H]
EC number: NA
Molecular weight: Translated: 49020; Mature: 48889
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLRKKNVDQMIAGAQRAGLKKALGALDLTFLGIGAIIGTGIFVLTGTGAVQAGPALMV CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHCCHHHHH SFVVAAIACGLSALAYAEFASTIPVAGSIYTYSYATLGELVAWIIGWDLMLEYSLAASAV HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVGWSGYLQSLLKGFGVVLPAVLTAAPGSVPGVTTYFDLPAFAVMLAITALLSVGIREST HHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC RVNNIMVFIKIAVVLLVIAVGVFHVTPANWTPFMPHGWQGVFGAAAVMFFAFIGFDAVSS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AAEEVKNPKRDLPVGIIASLGVCAVLYVAVAAVATGIVPSAQYAGITHPISYALQVAGQK HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHH WVAGFIDLGAVLGMLTVILVMTYGQTRITYAMSRDGLLPAVLSRVHPRFQTPFVATWIIG HHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHH LLCALIAALIPLNVLAELINIGTLAAFSMVSIAVIVLRRTRPDLPRAFRCPGVPTVPILA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH VAACLFLMLNLNAVTWKAFLIWLAIGLIVYFAYSRRHAKVAHGEAH HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCC >Mature Secondary Structure SLLRKKNVDQMIAGAQRAGLKKALGALDLTFLGIGAIIGTGIFVLTGTGAVQAGPALMV CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHCCHHHHH SFVVAAIACGLSALAYAEFASTIPVAGSIYTYSYATLGELVAWIIGWDLMLEYSLAASAV HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVGWSGYLQSLLKGFGVVLPAVLTAAPGSVPGVTTYFDLPAFAVMLAITALLSVGIREST HHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC RVNNIMVFIKIAVVLLVIAVGVFHVTPANWTPFMPHGWQGVFGAAAVMFFAFIGFDAVSS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AAEEVKNPKRDLPVGIIASLGVCAVLYVAVAAVATGIVPSAQYAGITHPISYALQVAGQK HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHH WVAGFIDLGAVLGMLTVILVMTYGQTRITYAMSRDGLLPAVLSRVHPRFQTPFVATWIIG HHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHH LLCALIAALIPLNVLAELINIGTLAAFSMVSIAVIVLRRTRPDLPRAFRCPGVPTVPILA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH VAACLFLMLNLNAVTWKAFLIWLAIGLIVYFAYSRRHAKVAHGEAH HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]