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The map label for this gene is ycgR1 [H]

Identifier: 238028843

GI number: 238028843

Start: 3767200

End: 3767952

Strand: Reverse

Name: ycgR1 [H]

Synonym: bglu_1g33080

Alternate gene names: 238028843

Gene position: 3767952-3767200 (Counterclockwise)

Preceding gene: 238028844

Following gene: 238028842

Centisome position: 96.45

GC content: 67.46

Gene sequence:

>753_bases
ATGAATAACGAAGCACTGATCGAAGCGTCTGGGGATGACGGTTCGCTCCCTGATTACGGCCGTCGCAACCCGCTCGAAAT
CGGCGTGCAGTTGCGCAATCTCGTCAACCGGGGCGATTTCCTGACGGTGCGTTATTCGGGCGGACAGCTCGTGACGCGCG
TGCTCGAGGTCGACGTGGGCGCCGGCACCTTCGTGTTCGACTGGGGCGCCGTGGAAGGGCAGAACGCCAGCCTGCTGGCC
GCGCCCTACGGGGTCTTCGAGGGGATGCCCGACGGGGTGCGCGTCGAGTTCACGATCGAGACGCCGGTGGCCACCGATTT
CGAGGGCCGGCCCGCGTTCCGCGCCAAGTTCCCCGACGTGCTCTATTTCGTGCAGCGCCGCGAGTATTTCCGCGTCGATG
CGCCGGTGCTCGAGCCCTATCTCGCGCGCGGCACGCTGCCCGAGGGCGAGAGCTTCACGTTCGAGATCGACAATCTCTCG
CTGGGCGGCATCGGGCTGCGCACCGGCGACGAACGCGCCGCGGCGCTCGAACCGGGCCTCACGCTGGAAGAGGTCGAACT
GAACCTGACCGGCCACGGCAAGCTCGCGCTCGACCTGGAACTGGTCTCGCAGCGCAGCCTCGAGACGCCGAGCGGCGCGC
GCCGCTACTACCTCGGGTTCCGCTTCGTGTCGCTGCCCGGCGCCGCCGAAAACACCTTGCAACGTCTCATCACGCAGCTC
GAAGTCAAGCGTCGCCAGCTCGCGCGCGCGTAG

Upstream 100 bases:

>100_bases
GGCGCGGCGACGGGGCGTCGAGAGACCAGCGGCCGCGTCCCACAGGCAGGCCATCAGAGCCCGGAGCAACCGGGCGGCAA
GCAGACCTAACCGGCAAGCC

Downstream 100 bases:

>100_bases
TCGCGCAAGCGTCTGGTGCGCCGGTCGGCCGCCGCGATTTTTGCCGCGCGCGGCCTCAATTTCCACCGGACGCCGCCGTT
ATACCGGGTGTCCCTTTCCC

Product: YcgR family protein

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR 1 [H]

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MNNEALIEASGDDGSLPDYGRRNPLEIGVQLRNLVNRGDFLTVRYSGGQLVTRVLEVDVGAGTFVFDWGAVEGQNASLLA
APYGVFEGMPDGVRVEFTIETPVATDFEGRPAFRAKFPDVLYFVQRREYFRVDAPVLEPYLARGTLPEGESFTFEIDNLS
LGGIGLRTGDERAAALEPGLTLEEVELNLTGHGKLALDLELVSQRSLETPSGARRYYLGFRFVSLPGAAENTLQRLITQL
EVKRRQLARA

Sequences:

>Translated_250_residues
MNNEALIEASGDDGSLPDYGRRNPLEIGVQLRNLVNRGDFLTVRYSGGQLVTRVLEVDVGAGTFVFDWGAVEGQNASLLA
APYGVFEGMPDGVRVEFTIETPVATDFEGRPAFRAKFPDVLYFVQRREYFRVDAPVLEPYLARGTLPEGESFTFEIDNLS
LGGIGLRTGDERAAALEPGLTLEEVELNLTGHGKLALDLELVSQRSLETPSGARRYYLGFRFVSLPGAAENTLQRLITQL
EVKRRQLARA
>Mature_250_residues
MNNEALIEASGDDGSLPDYGRRNPLEIGVQLRNLVNRGDFLTVRYSGGQLVTRVLEVDVGAGTFVFDWGAVEGQNASLLA
APYGVFEGMPDGVRVEFTIETPVATDFEGRPAFRAKFPDVLYFVQRREYFRVDAPVLEPYLARGTLPEGESFTFEIDNLS
LGGIGLRTGDERAAALEPGLTLEEVELNLTGHGKLALDLELVSQRSLETPSGARRYYLGFRFVSLPGAAENTLQRLITQL
EVKRRQLARA

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility [H]

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

Organism=Escherichia coli, GI1787443, Length=235, Percent_Identity=30.6382978723404, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR009926 [H]

Pfam domain/function: PF07238 PilZ; PF07317 YcgR [H]

EC number: NA

Molecular weight: Translated: 27541; Mature: 27541

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNEALIEASGDDGSLPDYGRRNPLEIGVQLRNLVNRGDFLTVRYSGGQLVTRVLEVDVG
CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHEEEEEHEECC
AGTFVFDWGAVEGQNASLLAAPYGVFEGMPDGVRVEFTIETPVATDFEGRPAFRAKFPDV
CCEEEEECCCCCCCCCEEEECCCHHHCCCCCCEEEEEEEECCCCCCCCCCCCHHHCCCHH
LYFVQRREYFRVDAPVLEPYLARGTLPEGESFTFEIDNLSLGGIGLRTGDERAAALEPGL
HHHHHHHHEEEECCHHHHHHHHCCCCCCCCEEEEEECCEEECCEEECCCCCCCCCCCCCC
TLEEVELNLTGHGKLALDLELVSQRSLETPSGARRYYLGFRFVSLPGAAENTLQRLITQL
EEEEEEEEEECCCEEEEEEEEHHHCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHH
EVKRRQLARA
HHHHHHHHCC
>Mature Secondary Structure
MNNEALIEASGDDGSLPDYGRRNPLEIGVQLRNLVNRGDFLTVRYSGGQLVTRVLEVDVG
CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHEEEEEHEECC
AGTFVFDWGAVEGQNASLLAAPYGVFEGMPDGVRVEFTIETPVATDFEGRPAFRAKFPDV
CCEEEEECCCCCCCCCEEEECCCHHHCCCCCCEEEEEEEECCCCCCCCCCCCHHHCCCHH
LYFVQRREYFRVDAPVLEPYLARGTLPEGESFTFEIDNLSLGGIGLRTGDERAAALEPGL
HHHHHHHHEEEECCHHHHHHHHCCCCCCCCEEEEEECCEEECCEEECCCCCCCCCCCCCC
TLEEVELNLTGHGKLALDLELVSQRSLETPSGARRYYLGFRFVSLPGAAENTLQRLITQL
EEEEEEEEEECCCEEEEEEEEHHHCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHH
EVKRRQLARA
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA