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The map label for this gene is yjcC [H]

Identifier: 238028788

GI number: 238028788

Start: 3698085

End: 3699377

Strand: Reverse

Name: yjcC [H]

Synonym: bglu_1g32520

Alternate gene names: 238028788

Gene position: 3699377-3698085 (Counterclockwise)

Preceding gene: 238028790

Following gene: 238028787

Centisome position: 94.7

GC content: 70.92

Gene sequence:

>1293_bases
ATGGTGACGACGATTCAGCAGGAGCGCCCGGTGGCGGTGACGGGATCGGCATACCGCTTCGAGCGCGAGGTGACGTCCGG
TTTCGAGCGCGTCGCGACGCGCCATCGCGACCTGTCGCTGTCGAGCATGTTTCAGCCGATCTTCAGCCTGTCGCACCAGC
GGGCGGTCGGCTACGAGGGGCTGCTGCGCGCGCACGATGCGCTCGACCGCGTGGTCGCGCCGGTGGACGTGTTCGGCGAG
GCGGCGCGGCATGGCGACGTGATGCTGGTGGACCGGCTGGCGCAGGCGCTGCATCTCGAGAATTTCTCGCTGCTCGGCGC
CGCGCGCGAGTGGCTGTTCCTGAACGTCCATCCGGGCGTGCTGACCGACCAGTTCCAGACCGCCGCGCTGCTCGCGAACC
TGAAGCGGCTGGGCATCTCGCCGCGGCGCGTGGTGCTCGAGGTGCTGGAGCAGCGCGCCGACGATCTCGACCGGCTCGCC
GAGGCCGTCAAGGCGTTTCGCGAGCACGGCTTCCTGATCGCGCTCGACGATTTCGGCGCCGGTCATTCGAACATCGAGCG
GATCTGGCAGCTGAACCCCGACATCGTCAAGCTCGACCGCATCATGCTGTCCCACGCCCAGCACCGCAGCGGCCAGACCG
CGATCCTGCACGGGCTCGTCACGCTGCTGCACGAGGCCGGCAAGCTGGTGCTGATCGAGGGCATCGAGACCGAGCACGAC
GCGCAGGTCGCGCTCGCCTGCGAGGCCGATTTCGTGCAGGGCTACTTCTTTGGCCGGCCGGCGCCGGGGCTGGCCGACGG
CGCCACCGCGTCGGCCTGCATCGGCGAGCTGACCGAGCGCTACCGCAGCCAGACCGAGGCGCGCGAGCGGCGCGACGCGC
AGCGCATCGCGCCGTACCTGCGCGCCTTCGAGCGCGCGGCGGAGCGGCTCTCGGCGGGCGAATCGCTCGACGAGGTGTGC
TGGAACTTCCTCTCGCTCGACGATGCGGCGCGCTGCTTCCTGCTCGACGCGCAGGGCCGGCAGGCCGACAGCAACGTGGT
GCGGCGCGCCGATCGGGCGCTGCACGAGATGCGCTTCGCGCCGCTGTCGGACGCGCAGGGCGCGAACTGGCTGCGCCGGC
CGTATTTCCGCGCGGCGATCGCCGAGCCGCAGCGCGTCCACGTGACGAGGCCGTACCTGTCGATCAACGAGGCGCTGCCG
TGCGTGACGCTGTCGATCGCGATCCGGATCGCGGATTCGCTGTGCGTGCTGTGCGGGGATATCGACTGGCCGGAGGCGGG
CCCGGCGGGGTAG

Upstream 100 bases:

>100_bases
CAATCGCAGCGAAATAACGCCAACACGAGGGTGCGAGGATGTGCATACCGATATTGCGTCGAGCGCCGGCCGCGGTGCCG
ACCGCCAGGAGGGTCGCCCA

Downstream 100 bases:

>100_bases
GCGGGCGCGCCGGCGGCACGCGTGAGCCGGCGCGACGGGTGTTGCTCCCGAGCCGGCGCATGAGAGTTTGGCGCCGCTCG
CTGCCACACGCCATGAACAA

Product: cyclic diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MVTTIQQERPVAVTGSAYRFEREVTSGFERVATRHRDLSLSSMFQPIFSLSHQRAVGYEGLLRAHDALDRVVAPVDVFGE
AARHGDVMLVDRLAQALHLENFSLLGAAREWLFLNVHPGVLTDQFQTAALLANLKRLGISPRRVVLEVLEQRADDLDRLA
EAVKAFREHGFLIALDDFGAGHSNIERIWQLNPDIVKLDRIMLSHAQHRSGQTAILHGLVTLLHEAGKLVLIEGIETEHD
AQVALACEADFVQGYFFGRPAPGLADGATASACIGELTERYRSQTEARERRDAQRIAPYLRAFERAAERLSAGESLDEVC
WNFLSLDDAARCFLLDAQGRQADSNVVRRADRALHEMRFAPLSDAQGANWLRRPYFRAAIAEPQRVHVTRPYLSINEALP
CVTLSIAIRIADSLCVLCGDIDWPEAGPAG

Sequences:

>Translated_430_residues
MVTTIQQERPVAVTGSAYRFEREVTSGFERVATRHRDLSLSSMFQPIFSLSHQRAVGYEGLLRAHDALDRVVAPVDVFGE
AARHGDVMLVDRLAQALHLENFSLLGAAREWLFLNVHPGVLTDQFQTAALLANLKRLGISPRRVVLEVLEQRADDLDRLA
EAVKAFREHGFLIALDDFGAGHSNIERIWQLNPDIVKLDRIMLSHAQHRSGQTAILHGLVTLLHEAGKLVLIEGIETEHD
AQVALACEADFVQGYFFGRPAPGLADGATASACIGELTERYRSQTEARERRDAQRIAPYLRAFERAAERLSAGESLDEVC
WNFLSLDDAARCFLLDAQGRQADSNVVRRADRALHEMRFAPLSDAQGANWLRRPYFRAAIAEPQRVHVTRPYLSINEALP
CVTLSIAIRIADSLCVLCGDIDWPEAGPAG
>Mature_430_residues
MVTTIQQERPVAVTGSAYRFEREVTSGFERVATRHRDLSLSSMFQPIFSLSHQRAVGYEGLLRAHDALDRVVAPVDVFGE
AARHGDVMLVDRLAQALHLENFSLLGAAREWLFLNVHPGVLTDQFQTAALLANLKRLGISPRRVVLEVLEQRADDLDRLA
EAVKAFREHGFLIALDDFGAGHSNIERIWQLNPDIVKLDRIMLSHAQHRSGQTAILHGLVTLLHEAGKLVLIEGIETEHD
AQVALACEADFVQGYFFGRPAPGLADGATASACIGELTERYRSQTEARERRDAQRIAPYLRAFERAAERLSAGESLDEVC
WNFLSLDDAARCFLLDAQGRQADSNVVRRADRALHEMRFAPLSDAQGANWLRRPYFRAAIAEPQRVHVTRPYLSINEALP
CVTLSIAIRIADSLCVLCGDIDWPEAGPAG

Specific function: Overexpression reduces biofilm formation [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=25, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI87082096, Length=154, Percent_Identity=29.8701298701299, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081743, Length=255, Percent_Identity=26.2745098039216, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1786507, Length=228, Percent_Identity=25.4385964912281, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787055, Length=231, Percent_Identity=23.8095238095238, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081921, Length=253, Percent_Identity=23.3201581027668, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788502, Length=233, Percent_Identity=27.0386266094421, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI87081980, Length=259, Percent_Identity=23.5521235521236, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87081845, Length=120, Percent_Identity=30.8333333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788849, Length=229, Percent_Identity=26.6375545851528, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI226510982, Length=151, Percent_Identity=26.4900662251656, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 47767; Mature: 47767

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTTIQQERPVAVTGSAYRFEREVTSGFERVATRHRDLSLSSMFQPIFSLSHQRAVGYEG
CCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHCCHHH
LLRAHDALDRVVAPVDVFGEAARHGDVMLVDRLAQALHLENFSLLGAAREWLFLNVHPGV
HHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHCCEEEEECCCCC
LTDQFQTAALLANLKRLGISPRRVVLEVLEQRADDLDRLAEAVKAFREHGFLIALDDFGA
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
GHSNIERIWQLNPDIVKLDRIMLSHAQHRSGQTAILHGLVTLLHEAGKLVLIEGIETEHD
CHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
AQVALACEADFVQGYFFGRPAPGLADGATASACIGELTERYRSQTEARERRDAQRIAPYL
CEEEEEECHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAFERAAERLSAGESLDEVCWNFLSLDDAARCFLLDAQGRQADSNVVRRADRALHEMRFA
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCC
PLSDAQGANWLRRPYFRAAIAEPQRVHVTRPYLSINEALPCVTLSIAIRIADSLCVLCGD
CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHEECC
IDWPEAGPAG
CCCCCCCCCC
>Mature Secondary Structure
MVTTIQQERPVAVTGSAYRFEREVTSGFERVATRHRDLSLSSMFQPIFSLSHQRAVGYEG
CCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHCCHHH
LLRAHDALDRVVAPVDVFGEAARHGDVMLVDRLAQALHLENFSLLGAAREWLFLNVHPGV
HHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHCCEEEEECCCCC
LTDQFQTAALLANLKRLGISPRRVVLEVLEQRADDLDRLAEAVKAFREHGFLIALDDFGA
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
GHSNIERIWQLNPDIVKLDRIMLSHAQHRSGQTAILHGLVTLLHEAGKLVLIEGIETEHD
CHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
AQVALACEADFVQGYFFGRPAPGLADGATASACIGELTERYRSQTEARERRDAQRIAPYL
CEEEEEECHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAFERAAERLSAGESLDEVCWNFLSLDDAARCFLLDAQGRQADSNVVRRADRALHEMRFA
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCC
PLSDAQGANWLRRPYFRAAIAEPQRVHVTRPYLSINEALPCVTLSIAIRIADSLCVLCGD
CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHEECC
IDWPEAGPAG
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]