| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is kdgR [C]
Identifier: 238028761
GI number: 238028761
Start: 3661682
End: 3662551
Strand: Direct
Name: kdgR [C]
Synonym: bglu_1g32250
Alternate gene names: 238028761
Gene position: 3661682-3662551 (Clockwise)
Preceding gene: 238028754
Following gene: 238028762
Centisome position: 93.73
GC content: 72.53
Gene sequence:
>870_bases TTGCCGCTCCCTTTCGCATCGCACGCCTGCCCGCCCATGTCCGACACCGAACCCGACGAGCCCGCCGACGACGGCGCCGA GGAAAAAGTGCGCTCCGGCATCCAGTCGATCGAGGTCGGCTTCCGGCTGCTCGACGTGCTGACCCAGGAGCCGCGCGCGA TGATGCTGCGCGACCTCGCGCATCGCGCGCAGATGAGCCCCGCCAAGGCGCACCGTTATCTGGTCAGCTTCCAGCGGCTC GGCGTGGTCGCGCAGGACCCCGTCTCGGGCCGCTACGAACTCGGCGGCTTCGCGCTGCAGATGGGGCTCGCGCGGCTCGC GCGGGTGGACGGCGTGAAGCTCGCGCGGCTCGCGCTGAGCACGCTGCGCGACCAGCTCGACCTGACCGTCGGCATCGCCG TGTGGGGCAACCACGGGCCGACCATCGTCCACTGGATGGAGTCGAGCCACCCGGCCCGCGCGTCGCTGAAGCTCGGCGAC GTGATGCCCCTGCTCGGCTCCGCCACCGGCCTGCTGTTCGCCGCCTACCTGCCGCGCGGCAAGACCGCCGCGCTGCTCGA ACGCGAGCTCGCCGACGCGCGCCGCGCGCCGCATCACCACGGCCCGCGCACGCGCGAGGCGCTCGAGGCATGCCTGGCCG AGGTGCGCGAGCACGGCGCCGCGCGCGTCGAGGGCATGCTGCTGCCCACCATCCACGCGTTCTGCATGCCCGTGTTCGAT TCGCTCGGCGAGCTCTCGCTCGGCCTCGTCGCGCTCGGCCAGGAGGGCGTGTTCGATATCGCCTGGGGCGGCAAGGTCGA TCTCGCGCTGCGCGAGTGCGCCGCGACGCTGTCCTATCAGATCGGCTACGACCCGGCGCGCGAAGCCTGA
Upstream 100 bases:
>100_bases ACGAGGGAGGGAAACTATTCTACGATGGTGAATCCGCGCGGCGAAGCCCGCGCCTCGCCGCCGGGCCGCTTCGCCCGCTC CAGCGTTCGCCGTCTTTCGC
Downstream 100 bases:
>100_bases CGCCGCGCCACGTCGCGCGGCGCGAACGATCGCGGCGCGCGGCTGTCCGACTGGTCCGTCCCGCCGCGCCGTATCCGGCC GAAGCGCGGACCCGAAGCGC
Product: IclR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator IclR Family; Transcriptional Regulator; Regulatory Proteins IclR; Regulatory Protein IclR; Transcriptional Regulator Family Protein; Transcription Regulator Protein; Transcriptional Regulatory Protein; Hmg Transcriptional Repressor; Transcriptional Regulator Family; Regulator; Transcriptional Regulator IclR Family Protein; Monosaccharide Transporter; TRANSCRIPTION REGULATOR PROTEIN IclR Domain; Regulatory Protein; IclR Family Regulatory Protein; IclR Family Transcription Regulator Protein; Transcriptional Regulator Iclr Family; Transcriptional Regulator Protein; IclR-Family Transcriptional Regulator; TRANSCRIPTIONal REGULATOR IclR Family
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MPLPFASHACPPMSDTEPDEPADDGAEEKVRSGIQSIEVGFRLLDVLTQEPRAMMLRDLAHRAQMSPAKAHRYLVSFQRL GVVAQDPVSGRYELGGFALQMGLARLARVDGVKLARLALSTLRDQLDLTVGIAVWGNHGPTIVHWMESSHPARASLKLGD VMPLLGSATGLLFAAYLPRGKTAALLERELADARRAPHHHGPRTREALEACLAEVREHGAARVEGMLLPTIHAFCMPVFD SLGELSLGLVALGQEGVFDIAWGGKVDLALRECAATLSYQIGYDPAREA
Sequences:
>Translated_289_residues MPLPFASHACPPMSDTEPDEPADDGAEEKVRSGIQSIEVGFRLLDVLTQEPRAMMLRDLAHRAQMSPAKAHRYLVSFQRL GVVAQDPVSGRYELGGFALQMGLARLARVDGVKLARLALSTLRDQLDLTVGIAVWGNHGPTIVHWMESSHPARASLKLGD VMPLLGSATGLLFAAYLPRGKTAALLERELADARRAPHHHGPRTREALEACLAEVREHGAARVEGMLLPTIHAFCMPVFD SLGELSLGLVALGQEGVFDIAWGGKVDLALRECAATLSYQIGYDPAREA >Mature_288_residues PLPFASHACPPMSDTEPDEPADDGAEEKVRSGIQSIEVGFRLLDVLTQEPRAMMLRDLAHRAQMSPAKAHRYLVSFQRLG VVAQDPVSGRYELGGFALQMGLARLARVDGVKLARLALSTLRDQLDLTVGIAVWGNHGPTIVHWMESSHPARASLKLGDV MPLLGSATGLLFAAYLPRGKTAALLERELADARRAPHHHGPRTREALEACLAEVREHGAARVEGMLLPTIHAFCMPVFDS LGELSLGLVALGQEGVFDIAWGGKVDLALRECAATLSYQIGYDPAREA
Specific function: Transcriptional Regulator Of The Kdgk Gene For The Kdg Kinase And The Kdgt Gene For The Kdg Permease. [C]
COG id: COG1414
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788131, Length=200, Percent_Identity=26, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789999, Length=277, Percent_Identity=25.6317689530686, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786468, Length=194, Percent_Identity=24.7422680412371, Blast_Score=61, Evalue=9e-11, Organism=Escherichia coli, GI87082359, Length=158, Percent_Identity=26.5822784810127, Blast_Score=61, Evalue=1e-10,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31249; Mature: 31118
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLPFASHACPPMSDTEPDEPADDGAEEKVRSGIQSIEVGFRLLDVLTQEPRAMMLRDLA CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH HRAQMSPAKAHRYLVSFQRLGVVAQDPVSGRYELGGFALQMGLARLARVDGVKLARLALS HHHHCCHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH TLRDQLDLTVGIAVWGNHGPTIVHWMESSHPARASLKLGDVMPLLGSATGLLFAAYLPRG HHHHHHCEEEEEEEECCCCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCC KTAALLERELADARRAPHHHGPRTREALEACLAEVREHGAARVEGMLLPTIHAFCMPVFD CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHH SLGELSLGLVALGQEGVFDIAWGGKVDLALRECAATLSYQIGYDPAREA HHHHHHHHHHEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure PLPFASHACPPMSDTEPDEPADDGAEEKVRSGIQSIEVGFRLLDVLTQEPRAMMLRDLA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH HRAQMSPAKAHRYLVSFQRLGVVAQDPVSGRYELGGFALQMGLARLARVDGVKLARLALS HHHHCCHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH TLRDQLDLTVGIAVWGNHGPTIVHWMESSHPARASLKLGDVMPLLGSATGLLFAAYLPRG HHHHHHCEEEEEEEECCCCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCC KTAALLERELADARRAPHHHGPRTREALEACLAEVREHGAARVEGMLLPTIHAFCMPVFD CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHH SLGELSLGLVALGQEGVFDIAWGGKVDLALRECAATLSYQIGYDPAREA HHHHHHHHHHEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA