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The map label for this gene is ymdB [C]

Identifier: 238028710

GI number: 238028710

Start: 3606758

End: 3607279

Strand: Reverse

Name: ymdB [C]

Synonym: bglu_1g31740

Alternate gene names: 238028710

Gene position: 3607279-3606758 (Counterclockwise)

Preceding gene: 238028711

Following gene: 238028707

Centisome position: 92.34

GC content: 72.22

Gene sequence:

>522_bases
ATGATCATGATCGGTTCGACCCGCGTCGAGGCACGCATCGTCGACATCACGACGCTCGCGCTCGACGCGATCGTCAACGC
CGCGAACGAGTCGCTGCTCGGCGGCGGCGGCGTGGACGGCGCGATCCATCGCGCGGCGGGGCCGGACCTGCTGGCCGAGT
GCCGCACGCTCGGCGGCTGCGCAACCGGCGACGCGAAGCTCACGCGCGGCTACCAGCTGCCGGCGCGGCACGTGATCCAC
ACGGTCGGGCCGGTCTGGCACGGCGGCATGTCGGGCGAGGCCGAGCAGCTCGCCTCGTGCTACCGGCGCTCGCTGGAGGT
GGCGGCGGCGGCCGGCTGCGTCTCGGTGGCGTTCCCTGCGATCAGTTGCGGGGTCTACCGCTTCCCGCCCGAGGCGGCCG
CCACGATCGCCGTCAGCACCGTGGCGTCGATGCTGCCCGGTGCCGGCTTCACGCGCATCGTGTTCGCCTGCTTCGCCGAA
GACCTGTTCGAACACTACCGGCGCGAACTGGCGCGGCTTTGA

Upstream 100 bases:

>100_bases
GTTGCCTGACGCGCCGCGCCGGCCGCAACGGCGGGCTGGCGCCGCGCCCGCATCGCGTCTACGCTTGGCGCTATCGCGAC
TGCCGGTGGAGGAGGCCAGC

Downstream 100 bases:

>100_bases
GAGGCGGGGCGAAGATGGCGCCGGGGCCGCCCGCGGTGCGGCCGCCGGGCCCCGCATCGCCTCATTCGCCTCCTTCGAAG
CCGGCCTGGCGCCAGGCCTC

Product: Appr-1-p processing enzyme family domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MIMIGSTRVEARIVDITTLALDAIVNAANESLLGGGGVDGAIHRAAGPDLLAECRTLGGCATGDAKLTRGYQLPARHVIH
TVGPVWHGGMSGEAEQLASCYRRSLEVAAAAGCVSVAFPAISCGVYRFPPEAAATIAVSTVASMLPGAGFTRIVFACFAE
DLFEHYRRELARL

Sequences:

>Translated_173_residues
MIMIGSTRVEARIVDITTLALDAIVNAANESLLGGGGVDGAIHRAAGPDLLAECRTLGGCATGDAKLTRGYQLPARHVIH
TVGPVWHGGMSGEAEQLASCYRRSLEVAAAAGCVSVAFPAISCGVYRFPPEAAATIAVSTVASMLPGAGFTRIVFACFAE
DLFEHYRRELARL
>Mature_173_residues
MIMIGSTRVEARIVDITTLALDAIVNAANESLLGGGGVDGAIHRAAGPDLLAECRTLGGCATGDAKLTRGYQLPARHVIH
TVGPVWHGGMSGEAEQLASCYRRSLEVAAAAGCVSVAFPAISCGVYRFPPEAAATIAVSTVASMLPGAGFTRIVFACFAE
DLFEHYRRELARL

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=162, Percent_Identity=54.9382716049383, Blast_Score=172, Evalue=2e-43,
Organism=Homo sapiens, GI13569840, Length=159, Percent_Identity=53.4591194968553, Blast_Score=151, Evalue=3e-37,
Organism=Homo sapiens, GI207450721, Length=145, Percent_Identity=42.0689655172414, Blast_Score=103, Evalue=5e-23,
Organism=Homo sapiens, GI8923143, Length=145, Percent_Identity=42.0689655172414, Blast_Score=103, Evalue=6e-23,
Organism=Homo sapiens, GI154813199, Length=135, Percent_Identity=38.5185185185185, Blast_Score=84, Evalue=5e-17,
Organism=Homo sapiens, GI226371718, Length=141, Percent_Identity=34.0425531914894, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371716, Length=141, Percent_Identity=34.0425531914894, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371714, Length=141, Percent_Identity=34.0425531914894, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371712, Length=141, Percent_Identity=34.0425531914894, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371710, Length=141, Percent_Identity=34.0425531914894, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI226371706, Length=141, Percent_Identity=34.0425531914894, Blast_Score=75, Evalue=3e-14,
Organism=Escherichia coli, GI1787283, Length=172, Percent_Identity=50, Blast_Score=152, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17538214, Length=158, Percent_Identity=46.8354430379747, Blast_Score=130, Evalue=2e-31,
Organism=Drosophila melanogaster, GI24586353, Length=133, Percent_Identity=38.3458646616541, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18031; Mature: 18031

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMIGSTRVEARIVDITTLALDAIVNAANESLLGGGGVDGAIHRAAGPDLLAECRTLGGC
CEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCC
ATGDAKLTRGYQLPARHVIHTVGPVWHGGMSGEAEQLASCYRRSLEVAAAAGCVSVAFPA
CCCCHHHHCCCCCHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISCGVYRFPPEAAATIAVSTVASMLPGAGFTRIVFACFAEDLFEHYRRELARL
HHCCCEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIMIGSTRVEARIVDITTLALDAIVNAANESLLGGGGVDGAIHRAAGPDLLAECRTLGGC
CEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCC
ATGDAKLTRGYQLPARHVIHTVGPVWHGGMSGEAEQLASCYRRSLEVAAAAGCVSVAFPA
CCCCHHHHCCCCCHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISCGVYRFPPEAAATIAVSTVASMLPGAGFTRIVFACFAEDLFEHYRRELARL
HHCCCEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]