Click here to switch to the map view.

The map label for this gene is rpoH [H]

Identifier: 238028681

GI number: 238028681

Start: 3573887

End: 3574822

Strand: Direct

Name: rpoH [H]

Synonym: bglu_1g31450

Alternate gene names: 238028681

Gene position: 3573887-3574822 (Clockwise)

Preceding gene: 238028678

Following gene: 238028682

Centisome position: 91.49

GC content: 64.64

Gene sequence:

>936_bases
GTGAGCAATGCTCTGACCCTTCCGAACACTCTCGGCCCGGTGCCGGCGAAGGCCTCTACGGCAGGCGCGCTGGCGCTCGC
CTCGAATTCGATGTTGCCCGGCCAGCTCGGCAACATCGACGCCTACATTCAGGCCGTGAACCGGATCCCGATGCTGACGC
CCGAGGAAGAGCGTCAGTATGCGACGGAATTCCGCGATCAGCAGAATCTCGAATCGGCCCGCCGGCTGGTGCTCTCGCAC
CTGCGTCTGGTGGTGTCGATCGCACGCAATTATCTCGGCTACGGCCTGCCGCACGGCGACCTGATCCAGGAAGGCAACAT
CGGCCTGATGAAGGCCGTCAAGCGCTTCGATCCCGACCAGAACGTGCGCCTCGTCTCGTATGCGATCCACTGGATCAAGG
CCGAGATCCACGAATACATCCTGCGCAACTGGCGCATGGTGAAGGTCGCCACCACGAAGGCGCAGCGCAAGCTGTTCTTC
AACCTGCGCAGCCACAAGAAGGGCATGCAGGCAATGACGCCCGAGGAAATCGACGGCCTCGCGCAGGAGTTGAACGTCAA
GCGCGAAGACGTGGCTGAAATGGAAACGCGCCTGTCGGGTGGCGACATCGCCCTCGAAGGGCAAGTGGAGGATGGCGAGG
AATCGTTCGCGCCCATCGCCTATCTGGCCGATTCGCACAACGAGCCGACCGCCGTGCTCGCCTCGCGCCAGCGCGACCGC
CTGCAGACGGAAGGCATCTCGGAGGCGCTCGACTCGCTCGACACGCGCAGCCGCCGCATCATCGAGGCGCGCTGGCTGAA
CGTCGGCGACGACGGCTCGGGGGGCTCGACGCTGCACGATCTAGCGGCCGAATTCGGTGTATCGGCCGAGCGCATTCGCC
AGATCGAGGCGAGCGCGATGAAGAAGATGCGCGCGGCGCTCGCCGCCTATGCCTGA

Upstream 100 bases:

>100_bases
GTCCCCTCTAAGTGTTTAGCACTCTCCTGACGAGAGTGCTAAGATAGTCTCGTGGAATCGTCTTGTTACGGGGCTCGTCC
CTGATTCCAAAGGAGTTTAT

Downstream 100 bases:

>100_bases
CGCGCGCGGCCGCCCGTAGCGGCGACGGCGTTCGGTTCGAAGTTCCAAGGCCTGCGGTGGCTCCACCGCAGGCCTTTCTG
TTTGATGGCGCGCGCTTCTG

Product: RNA polymerase factor sigma-32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSNALTLPNTLGPVPAKASTAGALALASNSMLPGQLGNIDAYIQAVNRIPMLTPEEERQYATEFRDQQNLESARRLVLSH
LRLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPDQNVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFF
NLRSHKKGMQAMTPEEIDGLAQELNVKREDVAEMETRLSGGDIALEGQVEDGEESFAPIAYLADSHNEPTAVLASRQRDR
LQTEGISEALDSLDTRSRRIIEARWLNVGDDGSGGSTLHDLAAEFGVSAERIRQIEASAMKKMRAALAAYA

Sequences:

>Translated_311_residues
MSNALTLPNTLGPVPAKASTAGALALASNSMLPGQLGNIDAYIQAVNRIPMLTPEEERQYATEFRDQQNLESARRLVLSH
LRLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPDQNVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFF
NLRSHKKGMQAMTPEEIDGLAQELNVKREDVAEMETRLSGGDIALEGQVEDGEESFAPIAYLADSHNEPTAVLASRQRDR
LQTEGISEALDSLDTRSRRIIEARWLNVGDDGSGGSTLHDLAAEFGVSAERIRQIEASAMKKMRAALAAYA
>Mature_310_residues
SNALTLPNTLGPVPAKASTAGALALASNSMLPGQLGNIDAYIQAVNRIPMLTPEEERQYATEFRDQQNLESARRLVLSHL
RLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPDQNVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFFN
LRSHKKGMQAMTPEEIDGLAQELNVKREDVAEMETRLSGGDIALEGQVEDGEESFAPIAYLADSHNEPTAVLASRQRDRL
QTEGISEALDSLDTRSRRIIEARWLNVGDDGSGGSTLHDLAAEFGVSAERIRQIEASAMKKMRAALAAYA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of heat shock promoters [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. Sigma-32 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789871, Length=282, Percent_Identity=51.063829787234, Blast_Score=281, Evalue=5e-77,
Organism=Escherichia coli, GI1789098, Length=271, Percent_Identity=31.7343173431734, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789448, Length=241, Percent_Identity=32.7800829875519, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012759
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 34435; Mature: 34303

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNALTLPNTLGPVPAKASTAGALALASNSMLPGQLGNIDAYIQAVNRIPMLTPEEERQY
CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHH
ATEFRDQQNLESARRLVLSHLRLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPDQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHCCCCC
NVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRSHKKGMQAMTPEEIDGL
CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AQELNVKREDVAEMETRLSGGDIALEGQVEDGEESFAPIAYLADSHNEPTAVLASRQRDR
HHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHCCCHHEECCCCCCCHHHHHHHHHHH
LQTEGISEALDSLDTRSRRIIEARWLNVGDDGSGGSTLHDLAAEFGVSAERIRQIEASAM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
KKMRAALAAYA
HHHHHHHHHCC
>Mature Secondary Structure 
SNALTLPNTLGPVPAKASTAGALALASNSMLPGQLGNIDAYIQAVNRIPMLTPEEERQY
CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHH
ATEFRDQQNLESARRLVLSHLRLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPDQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHCCCCC
NVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRSHKKGMQAMTPEEIDGL
CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AQELNVKREDVAEMETRLSGGDIALEGQVEDGEESFAPIAYLADSHNEPTAVLASRQRDR
HHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHCCCHHEECCCCCCCHHHHHHHHHHH
LQTEGISEALDSLDTRSRRIIEARWLNVGDDGSGGSTLHDLAAEFGVSAERIRQIEASAM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
KKMRAALAAYA
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]