| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028593
Identifier: 238028593
GI number: 238028593
Start: 3474266
End: 3475108
Strand: Direct
Name: 238028593
Synonym: bglu_1g30570
Alternate gene names: NA
Gene position: 3474266-3475108 (Clockwise)
Preceding gene: 238028592
Following gene: 238028599
Centisome position: 88.94
GC content: 70.82
Gene sequence:
>843_bases ATGCCCAAGCGTCCCAGGCCACGGCCCGCCGTCGTCGCACTCGATCACCACCAGCTCGATCTGCCGCTGTTCGACGGCCC GCCGCCCGCGCCGCCCGCTTCGCCGTCGCCCGAGCGCGACCGGTCGCGGCGCTCGCTGACGCTCGACGGCCGCGTCCTCG AGTACCGGCTCAAGCGCTCGGCACGCCGCACCATCGGCTTCGCGATCGACGGCAGCGGGCTCACCATCACCGCGCCGCGC TGGGTCACGCTCGCCGACATCGAGTCCGCGATCGCCGAGAAGCGCCGCTGGATCTTCGTGAAGCTCGCCGAATGGCAGAC CCGCATCGAGCAGCGCGCGCTGCCGCAGATCGACTGGAAGGACGGCGCGCGCATCCCGTTCCTCGGCAAGCCGGTCGAGA TCGCGCTGGCGTCGGCCGACGGCTCGCTCGGCTACGACGCGGCGCGTTCGGTGCTCGCGCTCGGGCTGCCCGCGCATGCC GGGCCGCAGCAGATCAAGGACCGCGTGCAGGGCTGGCTGCAGGGCGAGGCCAGGCGCATCTTCGGCGAGCGGCTGGTGGT GTACGCGCAGAAGCTCGGCGTCAGCTACAGCGCCTATGCGCTGTCGTCGGCCTCGACGCGCTGGGGCAGCTGCTCGAGCG ACGGCAAGATCCGCCTGAACTGGCGGCTCGTGCATTTCCCGGTCTCGATCATCGACTACGTGGTCGCGCACGAACTCTCG CACCTGCGCGAGATGAATCACAGCCCCGCGTTCTGGCAGACGGTCGAATCGATCTTCCCGGAATTCCGCGAGGCGCGGCA CACGCTCAAGCACCATCCGCCCGAGCTGCTGCCCGCGCTGTAG
Upstream 100 bases:
>100_bases GCAAGCGGCGAGCGCCGCTGACGATGCCCGGCCGGAGCCCGCCGCACGACCCCGATTCAAGGTTTCATTCATATTGCGCA CCGCCAAACGAAGCGAACTG
Downstream 100 bases:
>100_bases GCGCGCAGCATGCCGCGCCATGAAAAACGGCGCCTCGCGTGAGGCGCCGTTTTTCATGGGCATCCGGCTCAGTGCGACTT GCGCTGGATGAATTCGATCT
Product: metal-dependent hydrolase
Products: NA
Alternate protein names: Metal-Dependent Hydrolase; Zinc Metallopeptidase; Zinc-Dependent Protease; Zinc Metallopeptidases-Like Protein; Zinc Protease; Hydrolase; Zinc Metallopeptidase Protein; Protease; Zinc Metallo Protease
Number of amino acids: Translated: 280; Mature: 279
Protein sequence:
>280_residues MPKRPRPRPAVVALDHHQLDLPLFDGPPPAPPASPSPERDRSRRSLTLDGRVLEYRLKRSARRTIGFAIDGSGLTITAPR WVTLADIESAIAEKRRWIFVKLAEWQTRIEQRALPQIDWKDGARIPFLGKPVEIALASADGSLGYDAARSVLALGLPAHA GPQQIKDRVQGWLQGEARRIFGERLVVYAQKLGVSYSAYALSSASTRWGSCSSDGKIRLNWRLVHFPVSIIDYVVAHELS HLREMNHSPAFWQTVESIFPEFREARHTLKHHPPELLPAL
Sequences:
>Translated_280_residues MPKRPRPRPAVVALDHHQLDLPLFDGPPPAPPASPSPERDRSRRSLTLDGRVLEYRLKRSARRTIGFAIDGSGLTITAPR WVTLADIESAIAEKRRWIFVKLAEWQTRIEQRALPQIDWKDGARIPFLGKPVEIALASADGSLGYDAARSVLALGLPAHA GPQQIKDRVQGWLQGEARRIFGERLVVYAQKLGVSYSAYALSSASTRWGSCSSDGKIRLNWRLVHFPVSIIDYVVAHELS HLREMNHSPAFWQTVESIFPEFREARHTLKHHPPELLPAL >Mature_279_residues PKRPRPRPAVVALDHHQLDLPLFDGPPPAPPASPSPERDRSRRSLTLDGRVLEYRLKRSARRTIGFAIDGSGLTITAPRW VTLADIESAIAEKRRWIFVKLAEWQTRIEQRALPQIDWKDGARIPFLGKPVEIALASADGSLGYDAARSVLALGLPAHAG PQQIKDRVQGWLQGEARRIFGERLVVYAQKLGVSYSAYALSSASTRWGSCSSDGKIRLNWRLVHFPVSIIDYVVAHELSH LREMNHSPAFWQTVESIFPEFREARHTLKHHPPELLPAL
Specific function: Unknown
COG id: COG1451
COG function: function code R; Predicted metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31467; Mature: 31336
Theoretical pI: Translated: 10.51; Mature: 10.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKRPRPRPAVVALDHHQLDLPLFDGPPPAPPASPSPERDRSRRSLTLDGRVLEYRLKRS CCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCHHHCCCEEEECCHHHHHHHHHH ARRTIGFAIDGSGLTITAPRWVTLADIESAIAEKRRWIFVKLAEWQTRIEQRALPQIDWK HHHHEEEEEECCCEEEECCCEEEHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCC DGARIPFLGKPVEIALASADGSLGYDAARSVLALGLPAHAGPQQIKDRVQGWLQGEARRI CCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH FGERLVVYAQKLGVSYSAYALSSASTRWGSCSSDGKIRLNWRLVHFPVSIIDYVVAHELS HHHHHHHHHHHHCCCCHHHEECCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHH HLREMNHSPAFWQTVESIFPEFREARHTLKHHPPELLPAL HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC >Mature Secondary Structure PKRPRPRPAVVALDHHQLDLPLFDGPPPAPPASPSPERDRSRRSLTLDGRVLEYRLKRS CCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCHHHCCCEEEECCHHHHHHHHHH ARRTIGFAIDGSGLTITAPRWVTLADIESAIAEKRRWIFVKLAEWQTRIEQRALPQIDWK HHHHEEEEEECCCEEEECCCEEEHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCC DGARIPFLGKPVEIALASADGSLGYDAARSVLALGLPAHAGPQQIKDRVQGWLQGEARRI CCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH FGERLVVYAQKLGVSYSAYALSSASTRWGSCSSDGKIRLNWRLVHFPVSIIDYVVAHELS HHHHHHHHHHHHCCCCHHHEECCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHH HLREMNHSPAFWQTVESIFPEFREARHTLKHHPPELLPAL HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA