| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is pgk [H]
Identifier: 238028514
GI number: 238028514
Start: 3373085
End: 3374281
Strand: Reverse
Name: pgk [H]
Synonym: bglu_1g29780
Alternate gene names: 238028514
Gene position: 3374281-3373085 (Counterclockwise)
Preceding gene: 238028515
Following gene: 238028513
Centisome position: 86.38
GC content: 68.84
Gene sequence:
>1197_bases ATGAGCCAAGTAAAGCGTCTTACCGACCTGATCGCCGAAGGCAAAGTCTCCGGCCAACGCGTGTTCATCCGCGCCGATCT GAACGTGCCGCAGGACGACCACGGCAACATCACCGAGGACACGCGCGTGCGCGCCTCGGTGCCGGCGATCAAGGCGGCGC TCGACGCGGGCGCGGCGGTGATGGTCACCTCGCACCTGGGCCGTCCGACGGAAGGCGAGCTCAAGCCCGAGGATTCGCTC GCGCCGGTGGCCCGGCGCCTCGCCGAGCTGCTCGGCCGCGACGTGCCGCTGGTGTCGAACTGGGTCGAGAACGGCGTGAA CGTGACGCCGGGCAACGTCGTGCTGCTCGAGAACTGCCGCGTGAACAAGGGCGAGAAGAAGAACGACGACGCGCTCGCGC AGAAGATGGCCAAGCTCTGCGACATCTACGTCAACGACGCGTTCGGCACCGCGCACCGCGCCGAGGCCACCACCCACGGC ATCGCCAAATATGCCGGCATCGCCTGCGCGGGCCCGCTGCTCGCCGCCGAGCTCGACGCGCTCGGCAAGGCGCTCGGCAA TCCGAAGCGGCCGCTGGTGGCGATCGTCGCCGGCTCGAAGGTGTCCACCAAGCTGACCATCCTGAAGTCGCTGGCCGAGA AGGTCGACCAGCTGATCGTCGGCGGCGGCATCGCCAACACCTTCATGCTCGCCGCCGGCCTCACGATCGGCAAGTCGCTG GCCGAGCCGGACCTCGTCGACGAGGCGCGGACCATCATCGACGAGGCCCGCAAGCGCGGCGCATCGGTGCCGATCCCGTC GGACGTGGTCACGGCCAAGCAATTCGCCGCCACCGCCCAGGCCACCGTCAAGCAAGTCGGCGAGATCGAGGCGGACGACC TGATCCTCGACATCGGCCCGGAAACGGCCAAGGCGCTCGCCGGCCAGCTCGAGAAGGCCGGCACCATCGTCTGGAACGGG CCGGTCGGCGTGTTCGAGTTCGACCAGTTCGGCAACGGCACCAAGACGCTCGCCGAGGCGATCGCGAATTCGCCGGCGTT CTCGATCGCCGGCGGCGGCGACACGCTCGCCGCGATCGCCAAGTACGGCATCCACGACAAGGTCAGCTATATCTCCACCG GCGGCGGCGCGTTCCTCGAGTTCCTCGAGGGCAAGACGCTGCCGGCCGTGGAGGTGCTGGAAACGCGCGGCGCCTGA
Upstream 100 bases:
>100_bases GAACGTGTCGCACGGCCCAGCCCGGCCGTCCGGCGCCCCCGTCGGCAGCCCGCGCGCGAGGTTTCAGCACCGCCTTCCTC ATCAACCTTCAATCAGTCCC
Downstream 100 bases:
>100_bases GATGGCGCGAGGCCGCGCGGCAGCAAGCCGGAAGGCGGCGGGGGCGGCGCGCTCGCGCCCCGGACCGCGCGCCGGCGCCC GGCCGGAGCGCGTCGCCCCC
Product: phosphoglycerate kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MSQVKRLTDLIAEGKVSGQRVFIRADLNVPQDDHGNITEDTRVRASVPAIKAALDAGAAVMVTSHLGRPTEGELKPEDSL APVARRLAELLGRDVPLVSNWVENGVNVTPGNVVLLENCRVNKGEKKNDDALAQKMAKLCDIYVNDAFGTAHRAEATTHG IAKYAGIACAGPLLAAELDALGKALGNPKRPLVAIVAGSKVSTKLTILKSLAEKVDQLIVGGGIANTFMLAAGLTIGKSL AEPDLVDEARTIIDEARKRGASVPIPSDVVTAKQFAATAQATVKQVGEIEADDLILDIGPETAKALAGQLEKAGTIVWNG PVGVFEFDQFGNGTKTLAEAIANSPAFSIAGGGDTLAAIAKYGIHDKVSYISTGGGAFLEFLEGKTLPAVEVLETRGA
Sequences:
>Translated_398_residues MSQVKRLTDLIAEGKVSGQRVFIRADLNVPQDDHGNITEDTRVRASVPAIKAALDAGAAVMVTSHLGRPTEGELKPEDSL APVARRLAELLGRDVPLVSNWVENGVNVTPGNVVLLENCRVNKGEKKNDDALAQKMAKLCDIYVNDAFGTAHRAEATTHG IAKYAGIACAGPLLAAELDALGKALGNPKRPLVAIVAGSKVSTKLTILKSLAEKVDQLIVGGGIANTFMLAAGLTIGKSL AEPDLVDEARTIIDEARKRGASVPIPSDVVTAKQFAATAQATVKQVGEIEADDLILDIGPETAKALAGQLEKAGTIVWNG PVGVFEFDQFGNGTKTLAEAIANSPAFSIAGGGDTLAAIAKYGIHDKVSYISTGGGAFLEFLEGKTLPAVEVLETRGA >Mature_397_residues SQVKRLTDLIAEGKVSGQRVFIRADLNVPQDDHGNITEDTRVRASVPAIKAALDAGAAVMVTSHLGRPTEGELKPEDSLA PVARRLAELLGRDVPLVSNWVENGVNVTPGNVVLLENCRVNKGEKKNDDALAQKMAKLCDIYVNDAFGTAHRAEATTHGI AKYAGIACAGPLLAAELDALGKALGNPKRPLVAIVAGSKVSTKLTILKSLAEKVDQLIVGGGIANTFMLAAGLTIGKSLA EPDLVDEARTIIDEARKRGASVPIPSDVVTAKQFAATAQATVKQVGEIEADDLILDIGPETAKALAGQLEKAGTIVWNGP VGVFEFDQFGNGTKTLAEAIANSPAFSIAGGGDTLAAIAKYGIHDKVSYISTGGGAFLEFLEGKTLPAVEVLETRGA
Specific function: Second phase of glycolysis; second step. [C]
COG id: COG0126
COG function: function code G; 3-phosphoglycerate kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate kinase family [H]
Homologues:
Organism=Homo sapiens, GI31543397, Length=421, Percent_Identity=41.3301662707838, Blast_Score=281, Evalue=6e-76, Organism=Homo sapiens, GI4505763, Length=408, Percent_Identity=41.1764705882353, Blast_Score=274, Evalue=9e-74, Organism=Escherichia coli, GI1789294, Length=396, Percent_Identity=61.6161616161616, Blast_Score=463, Evalue=1e-132, Organism=Caenorhabditis elegans, GI17508823, Length=420, Percent_Identity=42.1428571428571, Blast_Score=292, Evalue=3e-79, Organism=Saccharomyces cerevisiae, GI6319857, Length=403, Percent_Identity=41.6873449131514, Blast_Score=269, Evalue=6e-73, Organism=Drosophila melanogaster, GI17136394, Length=408, Percent_Identity=39.7058823529412, Blast_Score=249, Evalue=2e-66, Organism=Drosophila melanogaster, GI24581203, Length=418, Percent_Identity=38.0382775119617, Blast_Score=241, Evalue=6e-64,
Paralogues:
None
Copy number: 2990 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1460 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001576 - InterPro: IPR015901 - InterPro: IPR015911 - InterPro: IPR015824 [H]
Pfam domain/function: PF00162 PGK [H]
EC number: =2.7.2.3 [H]
Molecular weight: Translated: 41425; Mature: 41294
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS00111 PGLYCERATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQVKRLTDLIAEGKVSGQRVFIRADLNVPQDDHGNITEDTRVRASVPAIKAALDAGAAV CCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE MVTSHLGRPTEGELKPEDSLAPVARRLAELLGRDVPLVSNWVENGVNVTPGNVVLLENCR EEEHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEECCC VNKGEKKNDDALAQKMAKLCDIYVNDAFGTAHRAEATTHGIAKYAGIACAGPLLAAELDA CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGKALGNPKRPLVAIVAGSKVSTKLTILKSLAEKVDQLIVGGGIANTFMLAAGLTIGKSL HHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH AEPDLVDEARTIIDEARKRGASVPIPSDVVTAKQFAATAQATVKQVGEIEADDLILDIGP CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC ETAKALAGQLEKAGTIVWNGPVGVFEFDQFGNGTKTLAEAIANSPAFSIAGGGDTLAAIA HHHHHHHHHHHHCCEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHH KYGIHDKVSYISTGGGAFLEFLEGKTLPAVEVLETRGA HHCCCCCHHHEECCCHHHHHHHCCCCCCHHHHHHCCCC >Mature Secondary Structure SQVKRLTDLIAEGKVSGQRVFIRADLNVPQDDHGNITEDTRVRASVPAIKAALDAGAAV CHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE MVTSHLGRPTEGELKPEDSLAPVARRLAELLGRDVPLVSNWVENGVNVTPGNVVLLENCR EEEHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEECCC VNKGEKKNDDALAQKMAKLCDIYVNDAFGTAHRAEATTHGIAKYAGIACAGPLLAAELDA CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGKALGNPKRPLVAIVAGSKVSTKLTILKSLAEKVDQLIVGGGIANTFMLAAGLTIGKSL HHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH AEPDLVDEARTIIDEARKRGASVPIPSDVVTAKQFAATAQATVKQVGEIEADDLILDIGP CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC ETAKALAGQLEKAGTIVWNGPVGVFEFDQFGNGTKTLAEAIANSPAFSIAGGGDTLAAIA HHHHHHHHHHHHCCEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHH KYGIHDKVSYISTGGGAFLEFLEGKTLPAVEVLETRGA HHCCCCCHHHEECCCHHHHHHHCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]