| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is scbA [H]
Identifier: 238028490
GI number: 238028490
Start: 3342978
End: 3343928
Strand: Direct
Name: scbA [H]
Synonym: bglu_1g29540
Alternate gene names: 238028490
Gene position: 3342978-3343928 (Clockwise)
Preceding gene: 238028489
Following gene: 238028491
Centisome position: 85.57
GC content: 70.77
Gene sequence:
>951_bases ATGACTTTCGCCGCCACGTCGCGCGCGCCGCTGCGCGCCCGCTCCCCCCGCTCCCCCCGCTCCCCCCGCTCCGTCCGCTC CCGCCTGGGCCGCTGGCTCGCCGCCGGCTGCGCCGCGCTCGCACTCGCCGCGCCGGCGCTCGCGCAGGCCGCGAAGCTGC AGGTGGTGGCCGCCGAGAACTTCTATGGCGATGTGGTCAGGCAAATCGGCGGCGCCAACGTGGCGGTGTCGAGCATCCTC AGCAACCCGGACCAGGACCCGCACCTGTTCGAGGCGAGCCCGAAGACGGCGCGCGAGCTGCAGCATGCCAACCTGGTGGT CTACAACGGCGCCGACTATGATCCGTGGATGGCCAAGCTGCTGGCGGCCTCGAACAACGCCGCGCGCAAGACCATCGTGG TGGCCGACCTGGTCGGCAAAAAGCCCGGCGACAACCCGCATCTCTGGTACGATCCGGCCACGATGCCGGCCGCCGCGCGA GCCATCGCCGCCGCCCTCGCGGCGGCCGATCCCGCGCATCGGGCCGAGTACGAGACGAACCTCGCGAGCTTCCTCGCCTC GCTCAAGCCGATCGACGCGAAGATCGCCGCGCTGCGCGCGCAATACCGCGGCGTGCCGGTCACCGCCACCGAGCCGGTGT TCGGCTACATGTCGGACGCGATCGGCCTGACGATGCGCAACCTGAGCTTCCAGCTCGCGACCATGAACGACACCGAGGCG AGCGCGAGCGACATCGCGGCGTTCGAGAACGATCTGCGCACGCGTCAGGTGCGCGTGCTGATCTACAACAGCCAGGCCGA GGAGCCGATGACCAAGCGCATGCTCAAGATCGCGAAGGACGCGTCCGTGCCGACCGTCAGCGTCACCGAGACCGAGCCGG CCGGCAAGACCTTCCAGCAGTGGATGCTCGCGCAGCTCGAGGCGCTGGGCACCGCGCTGGGCCGCCACTGA
Upstream 100 bases:
>100_bases CGAATGCAAGACTCATCCCAAGGGCGCGCCGAACGCGTGACCCGTCCCGCCGCGCGCCCGTTGCGGGCGCGCGGCTCGCC CACTCCGTCGAGGAATCAGC
Downstream 100 bases:
>100_bases GACCATGACCACTGCTGCTTGCGCCGCGCTCGCGCTCGAACGCGTCACGCTCGAACTGGGCGGGCGCACCATCCTGCGCG ACGTCAGCCTGGCCGTCGAG
Product: putative cation ABC transporter periplasmic cation-binding protein
Products: Zn (II) [Cytoplasm]; ADP; phosphate [C]
Alternate protein names: NA
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MTFAATSRAPLRARSPRSPRSPRSVRSRLGRWLAAGCAALALAAPALAQAAKLQVVAAENFYGDVVRQIGGANVAVSSIL SNPDQDPHLFEASPKTARELQHANLVVYNGADYDPWMAKLLAASNNAARKTIVVADLVGKKPGDNPHLWYDPATMPAAAR AIAAALAAADPAHRAEYETNLASFLASLKPIDAKIAALRAQYRGVPVTATEPVFGYMSDAIGLTMRNLSFQLATMNDTEA SASDIAAFENDLRTRQVRVLIYNSQAEEPMTKRMLKIAKDASVPTVSVTETEPAGKTFQQWMLAQLEALGTALGRH
Sequences:
>Translated_316_residues MTFAATSRAPLRARSPRSPRSPRSVRSRLGRWLAAGCAALALAAPALAQAAKLQVVAAENFYGDVVRQIGGANVAVSSIL SNPDQDPHLFEASPKTARELQHANLVVYNGADYDPWMAKLLAASNNAARKTIVVADLVGKKPGDNPHLWYDPATMPAAAR AIAAALAAADPAHRAEYETNLASFLASLKPIDAKIAALRAQYRGVPVTATEPVFGYMSDAIGLTMRNLSFQLATMNDTEA SASDIAAFENDLRTRQVRVLIYNSQAEEPMTKRMLKIAKDASVPTVSVTETEPAGKTFQQWMLAQLEALGTALGRH >Mature_315_residues TFAATSRAPLRARSPRSPRSPRSVRSRLGRWLAAGCAALALAAPALAQAAKLQVVAAENFYGDVVRQIGGANVAVSSILS NPDQDPHLFEASPKTARELQHANLVVYNGADYDPWMAKLLAASNNAARKTIVVADLVGKKPGDNPHLWYDPATMPAAARA IAAALAAADPAHRAEYETNLASFLASLKPIDAKIAALRAQYRGVPVTATEPVFGYMSDAIGLTMRNLSFQLATMNDTEAS ASDIAAFENDLRTRQVRVLIYNSQAEEPMTKRMLKIAKDASVPTVSVTETEPAGKTFQQWMLAQLEALGTALGRH
Specific function: Part of an ATP-driven transport system for manganese. Does not exhibit adhesion properties [H]
COG id: COG0803
COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface adhesin
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 9 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006127 - InterPro: IPR006129 - InterPro: IPR006128 [H]
Pfam domain/function: PF01297 SBP_bac_9 [H]
EC number: NA
Molecular weight: Translated: 33834; Mature: 33703
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFAATSRAPLRARSPRSPRSPRSVRSRLGRWLAAGCAALALAAPALAQAAKLQVVAAEN CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECH FYGDVVRQIGGANVAVSSILSNPDQDPHLFEASPKTARELQHANLVVYNGADYDPWMAKL HHHHHHHHHCCCHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCEEEECCCCCCHHHHHH LAASNNAARKTIVVADLVGKKPGDNPHLWYDPATMPAAARAIAAALAAADPAHRAEYETN HHHCCCCCHHEEEEEEHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHH LASFLASLKPIDAKIAALRAQYRGVPVTATEPVFGYMSDAIGLTMRNLSFQLATMNDTEA HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCC SASDIAAFENDLRTRQVRVLIYNSQAEEPMTKRMLKIAKDASVPTVSVTETEPAGKTFQQ CHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH WMLAQLEALGTALGRH HHHHHHHHHHHHHCCC >Mature Secondary Structure TFAATSRAPLRARSPRSPRSPRSVRSRLGRWLAAGCAALALAAPALAQAAKLQVVAAEN CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECH FYGDVVRQIGGANVAVSSILSNPDQDPHLFEASPKTARELQHANLVVYNGADYDPWMAKL HHHHHHHHHCCCHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCEEEECCCCCCHHHHHH LAASNNAARKTIVVADLVGKKPGDNPHLWYDPATMPAAARAIAAALAAADPAHRAEYETN HHHCCCCCHHEEEEEEHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHH LASFLASLKPIDAKIAALRAQYRGVPVTATEPVFGYMSDAIGLTMRNLSFQLATMNDTEA HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCC SASDIAAFENDLRTRQVRVLIYNSQAEEPMTKRMLKIAKDASVPTVSVTETEPAGKTFQQ CHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH WMLAQLEALGTALGRH HHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Zn (II) [Periplasm]; H2O; ATP [C]
Specific reaction: Zn (II) [Periplasm] + H2O + ATP = Zn (II) [Cytoplasm] + ADP + phosphate [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8675315 [H]