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The map label for this gene is argF [H]

Identifier: 238028454

GI number: 238028454

Start: 3305605

End: 3306534

Strand: Direct

Name: argF [H]

Synonym: bglu_1g29180

Alternate gene names: 238028454

Gene position: 3305605-3306534 (Clockwise)

Preceding gene: 238028452

Following gene: 238028456

Centisome position: 84.62

GC content: 64.52

Gene sequence:

>930_bases
ATGACCGCCAAAACCATTCGTCACTACCTGCAGTTCAAGGATTTCTCGCTGGAAGACTACGAGTACGTGCTCGAACGCAC
GGGTATCCTGAAACGCAAGTTCAAGAGCTACGAAACCTACCATCCGCTGCACGACCGCACGCTCGCGATGATCTTCGAGA
AGAACTCGACGCGCACGCGGCTCTCGTTCGAGGCCGGCATCTTCCAGCTCGGCGGCCACGCGGTGTTCATGAGCACGCGC
GACACGCAGCTCGGCCGCGGCGAGCCGGTGGAGGATTCGGCACAGGTGATCTCGCGGATGGTCGACATCATCATGATCCG
CACCTTCGAGCAGGAGATCATCCAGCGCTTCGCCGACAATTCGCGCGTGCCGGTGATCAACGGCCTGACCAACGAGTTCC
ACCCCTGCCAGGTGCTGGCGGACATCTTCACGTACTACGAACACCGCGGCCCGATCCGCGGCAAGACGGTCGCCTGGGTC
GGCGACGCCAACAACATGCTCTACACCTGGATCCAGGCCGCGCAGATCCTCGGCTTCAAGCTGCGCCTGTCCACGCCGCC
CGGCTACGCGCTCGACATGGCGCTCGTCGACGCCGCCAGCGCGTCGGCCTACGAAGTGGTCGAGGATCCGAACGAAGCCT
GCCGCGGCGCCGATCTCGTGACGACCGACGTGTGGACCAGCATGGGCTTCGAGGCCGAGAACGAGGTCCGCAAGCAGGCC
TTCGCCGACTGGTGCGTCGACGAGGAGATGATGGCCGGCGCGAACCCCGACGCCCTCTTCATGCACTGCCTGCCCGCCCA
CCGCGGCGAGGAAGTGTCGGCCGGCGTGATCGACGGCCCGCAGAGCGTGGTCTGGGACGAGGCGGAAAACCGCCTGCACG
TGCAGAAGGCGCTGATGGAATTCCTGCTGCTCGGCAAGCTCAACCACTGA

Upstream 100 bases:

>100_bases
AAGCCGGCAAAATCCTTTATGCTCGACCGGATTACAACACTCCGACGGCGGGCGCCGCACGGCGCGCGAGCGCCGCCTGC
CCCCCGCCGCGTCTCGTTTC

Downstream 100 bases:

>100_bases
GCGTTGCACCGCAGCTGACAGGAAAAAGCCCCGCCCGAGCGGGGCTTTTTCCTGGGCGCCCGGCTGGGCGGCCCGGCGCG
GCCGGCCTCAGATCGCGACC

Product: ornithine carbamoyltransferase

Products: NA

Alternate protein names: OTCase [H]

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MTAKTIRHYLQFKDFSLEDYEYVLERTGILKRKFKSYETYHPLHDRTLAMIFEKNSTRTRLSFEAGIFQLGGHAVFMSTR
DTQLGRGEPVEDSAQVISRMVDIIMIRTFEQEIIQRFADNSRVPVINGLTNEFHPCQVLADIFTYYEHRGPIRGKTVAWV
GDANNMLYTWIQAAQILGFKLRLSTPPGYALDMALVDAASASAYEVVEDPNEACRGADLVTTDVWTSMGFEAENEVRKQA
FADWCVDEEMMAGANPDALFMHCLPAHRGEEVSAGVIDGPQSVVWDEAENRLHVQKALMEFLLLGKLNH

Sequences:

>Translated_309_residues
MTAKTIRHYLQFKDFSLEDYEYVLERTGILKRKFKSYETYHPLHDRTLAMIFEKNSTRTRLSFEAGIFQLGGHAVFMSTR
DTQLGRGEPVEDSAQVISRMVDIIMIRTFEQEIIQRFADNSRVPVINGLTNEFHPCQVLADIFTYYEHRGPIRGKTVAWV
GDANNMLYTWIQAAQILGFKLRLSTPPGYALDMALVDAASASAYEVVEDPNEACRGADLVTTDVWTSMGFEAENEVRKQA
FADWCVDEEMMAGANPDALFMHCLPAHRGEEVSAGVIDGPQSVVWDEAENRLHVQKALMEFLLLGKLNH
>Mature_308_residues
TAKTIRHYLQFKDFSLEDYEYVLERTGILKRKFKSYETYHPLHDRTLAMIFEKNSTRTRLSFEAGIFQLGGHAVFMSTRD
TQLGRGEPVEDSAQVISRMVDIIMIRTFEQEIIQRFADNSRVPVINGLTNEFHPCQVLADIFTYYEHRGPIRGKTVAWVG
DANNMLYTWIQAAQILGFKLRLSTPPGYALDMALVDAASASAYEVVEDPNEACRGADLVTTDVWTSMGFEAENEVRKQAF
ADWCVDEEMMAGANPDALFMHCLPAHRGEEVSAGVIDGPQSVVWDEAENRLHVQKALMEFLLLGKLNH

Specific function: Arginine biosynthesis; sixth step. [C]

COG id: COG0078

COG function: function code E; Ornithine carbamoyltransferase

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATCase/OTCase family [H]

Homologues:

Organism=Homo sapiens, GI38788445, Length=304, Percent_Identity=39.8026315789474, Blast_Score=223, Evalue=1e-58,
Organism=Homo sapiens, GI18105007, Length=302, Percent_Identity=25.8278145695364, Blast_Score=99, Evalue=5e-21,
Organism=Escherichia coli, GI1790703, Length=325, Percent_Identity=36.9230769230769, Blast_Score=197, Evalue=5e-52,
Organism=Escherichia coli, GI1786469, Length=325, Percent_Identity=36.9230769230769, Blast_Score=194, Evalue=5e-51,
Organism=Escherichia coli, GI2367364, Length=311, Percent_Identity=29.903536977492, Blast_Score=88, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI193204318, Length=133, Percent_Identity=36.0902255639098, Blast_Score=79, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6322373, Length=328, Percent_Identity=34.1463414634146, Blast_Score=202, Evalue=5e-53,
Organism=Saccharomyces cerevisiae, GI6322331, Length=304, Percent_Identity=24.6710526315789, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24642586, Length=310, Percent_Identity=25.4838709677419, Blast_Score=91, Evalue=1e-18,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2066 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006132
- InterPro:   IPR006130
- InterPro:   IPR006131
- InterPro:   IPR002292 [H]

Pfam domain/function: PF00185 OTCace; PF02729 OTCace_N [H]

EC number: =2.1.3.3 [H]

Molecular weight: Translated: 35065; Mature: 34934

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS00097 CARBAMOYLTRANSFERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAKTIRHYLQFKDFSLEDYEYVLERTGILKRKFKSYETYHPLHDRTLAMIFEKNSTRTR
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEE
LSFEAGIFQLGGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFEQEIIQRFADN
EEECCCCEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SRVPVINGLTNEFHPCQVLADIFTYYEHRGPIRGKTVAWVGDANNMLYTWIQAAQILGFK
CCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCEE
LRLSTPPGYALDMALVDAASASAYEVVEDPNEACRGADLVTTDVWTSMGFEAENEVRKQA
EEECCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHCCCCEEEHHHHHHCCCCCHHHHHHHH
FADWCVDEEMMAGANPDALFMHCLPAHRGEEVSAGVIDGPQSVVWDEAENRLHVQKALME
HHHHCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
FLLLGKLNH
HHHHHCCCC
>Mature Secondary Structure 
TAKTIRHYLQFKDFSLEDYEYVLERTGILKRKFKSYETYHPLHDRTLAMIFEKNSTRTR
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEE
LSFEAGIFQLGGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFEQEIIQRFADN
EEECCCCEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SRVPVINGLTNEFHPCQVLADIFTYYEHRGPIRGKTVAWVGDANNMLYTWIQAAQILGFK
CCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCEE
LRLSTPPGYALDMALVDAASASAYEVVEDPNEACRGADLVTTDVWTSMGFEAENEVRKQA
EEECCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHCCCCEEEHHHHHHCCCCCHHHHHHHH
FADWCVDEEMMAGANPDALFMHCLPAHRGEEVSAGVIDGPQSVVWDEAENRLHVQKALME
HHHHCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
FLLLGKLNH
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA