| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is xseA [H]
Identifier: 238028444
GI number: 238028444
Start: 3295658
End: 3297058
Strand: Reverse
Name: xseA [H]
Synonym: bglu_1g29080
Alternate gene names: 238028444
Gene position: 3297058-3295658 (Counterclockwise)
Preceding gene: 238028450
Following gene: 238028443
Centisome position: 84.4
GC content: 74.52
Gene sequence:
>1401_bases ATGCCATCCGATTCCTTTCCGTCCGGCCCGGGCGGCGCCACTTTCGGCCGTGCCGGCGACACCGGCGACGGCGTGATTCC CGTTTCCGCGCTGAACCGCGCGATCGGCTCGATGCTGGAGCGGTCGTTTCCGCTCTGCTGGGTGTCGGGCGAGGTGTCGA ACTTCACGCGCGCGGCAAGCGGCCATTGGTACTTCTCGATCAAGGACAAGGACGCGCAGATGCGCTGCGTGATGTTTCGC GGCCGGGCCCAGCATGCGCCGTTCACGCCGCGCGAGGGCGATCGCATCGAAGTGCGCGCGCTGGTCAGCATGTACGAGCC GCGCGGCGAGGTGCAGCTCAACGTCGAAGCGGTGCGGCGCACCGGGCAGGGCAAGCTGTTCGAGGCATTCCTGCGGCTCA AGGCGCAGCTCGAGTCCGAGGGCCTGTTCGACCCGCAGCGCAAGCGGCCGCTGCCCGCCCATCCGCGCGCGATCGGCATC GTCACCTCGCTGCAGGCCGCCGCGCTGCGCGACGTGCTGACCACGCTCGCGCGCCGCGCGCCGCATCTGCCGGTGATCGT CTATCCGGCGCCGGTACAGGGCTCGGGCGCGGCCGAGAAGCTCGCGGCGATGGTCGAGACGGCCAATGCGCGGCGCGAGG TGGACGTGCTGATCGTGTGCCGCGGCGGCGGCTCGATCGAGGATCTCTGGTCGTTCAACGACGAGGCGCTGGCGCGCGCG ATCGCCGCCAGCGCGCTGCCGGTGGTGAGCGGGGTCGGCCACGAAACCGATTTCACGATCGCCGATTTCGCCGCCGACCT GCGCGCGCCGACACCGACCGGCGCGGCCGAGCTGGTCAGTCCGCAGCGCGCGCTGCTGCTGCGCGAGCTGGCCGAGCGCC AGGCGGCGCTCGCGCGCGGCCTGCGGCGCGGGCTCGACGCGCGGGCCCAGCAGCTCGACTGGCTGGCGCGGCGCCTGGTG AGCCCGGCCGAACGGCTCGCCAGGCAGCGCACCCATCTGCAGCAGCTCGCGCTGCGGCTCGCCTCGGCCGGCGCGCGGCC GGTGCGCGATGCGCGGGCGCGCTTCGCGCTGGTGATGCTGCGCTGGCAGCGCGTCCGGCCCGACGCCGCCGCCGCGCGCC AGGCGCTCGCCGGCTGGTCGCAACGGCTCGCCACGGCGCTGCGGCATCGGCACGAGCGCGCCGCGGCGCGCGTGTCCGGC TGCGCGGCGCGCCTCGAGGTGCTGAGCCCGCAGCGCACGCTGGAGCGCGGCTACGCGGCGCTGATCGACACCCAGACGGG CCGCGCCGTGCGCGCGCCGGGCGCGCTCGCGCCGCAGCGCCGGCTCACCGTGCATCTCGCCGAAGGCACGGCGGACGTGT CGATCGCCGACGTCCAGCCGCGCCTCGATGAAACGTTCTGA
Upstream 100 bases:
>100_bases GGCTGCGGGGCGGCCGCCCCGCAGGCCGACGCCGAGCACGACGCTTGCCGACGCGGCGCGACGAGGCTATCGTGTGCGCG CCTTCATTCCTCCCTACGCG
Downstream 100 bases:
>100_bases TCGATCGTTTCGCGGGGCCGCGGCGGGACCGGAATCTGCTGAGGCAGGCGGGCGTGCCGCGGGCGCACTGCGGGCTTGCC CTCATCGGGCTTGATCTCGA
Product: exodeoxyribonuclease VII large subunit
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 466; Mature: 465
Protein sequence:
>466_residues MPSDSFPSGPGGATFGRAGDTGDGVIPVSALNRAIGSMLERSFPLCWVSGEVSNFTRAASGHWYFSIKDKDAQMRCVMFR GRAQHAPFTPREGDRIEVRALVSMYEPRGEVQLNVEAVRRTGQGKLFEAFLRLKAQLESEGLFDPQRKRPLPAHPRAIGI VTSLQAAALRDVLTTLARRAPHLPVIVYPAPVQGSGAAEKLAAMVETANARREVDVLIVCRGGGSIEDLWSFNDEALARA IAASALPVVSGVGHETDFTIADFAADLRAPTPTGAAELVSPQRALLLRELAERQAALARGLRRGLDARAQQLDWLARRLV SPAERLARQRTHLQQLALRLASAGARPVRDARARFALVMLRWQRVRPDAAAARQALAGWSQRLATALRHRHERAAARVSG CAARLEVLSPQRTLERGYAALIDTQTGRAVRAPGALAPQRRLTVHLAEGTADVSIADVQPRLDETF
Sequences:
>Translated_466_residues MPSDSFPSGPGGATFGRAGDTGDGVIPVSALNRAIGSMLERSFPLCWVSGEVSNFTRAASGHWYFSIKDKDAQMRCVMFR GRAQHAPFTPREGDRIEVRALVSMYEPRGEVQLNVEAVRRTGQGKLFEAFLRLKAQLESEGLFDPQRKRPLPAHPRAIGI VTSLQAAALRDVLTTLARRAPHLPVIVYPAPVQGSGAAEKLAAMVETANARREVDVLIVCRGGGSIEDLWSFNDEALARA IAASALPVVSGVGHETDFTIADFAADLRAPTPTGAAELVSPQRALLLRELAERQAALARGLRRGLDARAQQLDWLARRLV SPAERLARQRTHLQQLALRLASAGARPVRDARARFALVMLRWQRVRPDAAAARQALAGWSQRLATALRHRHERAAARVSG CAARLEVLSPQRTLERGYAALIDTQTGRAVRAPGALAPQRRLTVHLAEGTADVSIADVQPRLDETF >Mature_465_residues PSDSFPSGPGGATFGRAGDTGDGVIPVSALNRAIGSMLERSFPLCWVSGEVSNFTRAASGHWYFSIKDKDAQMRCVMFRG RAQHAPFTPREGDRIEVRALVSMYEPRGEVQLNVEAVRRTGQGKLFEAFLRLKAQLESEGLFDPQRKRPLPAHPRAIGIV TSLQAAALRDVLTTLARRAPHLPVIVYPAPVQGSGAAEKLAAMVETANARREVDVLIVCRGGGSIEDLWSFNDEALARAI AASALPVVSGVGHETDFTIADFAADLRAPTPTGAAELVSPQRALLLRELAERQAALARGLRRGLDARAQQLDWLARRLVS PAERLARQRTHLQQLALRLASAGARPVRDARARFALVMLRWQRVRPDAAAARQALAGWSQRLATALRHRHERAAARVSGC AARLEVLSPQRTLERGYAALIDTQTGRAVRAPGALAPQRRLTVHLAEGTADVSIADVQPRLDETF
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=440, Percent_Identity=42.5, Blast_Score=340, Evalue=1e-94,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 50615; Mature: 50483
Theoretical pI: Translated: 11.41; Mature: 11.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSDSFPSGPGGATFGRAGDTGDGVIPVSALNRAIGSMLERSFPLCWVSGEVSNFTRAAS CCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCC GHWYFSIKDKDAQMRCVMFRGRAQHAPFTPREGDRIEVRALVSMYEPRGEVQLNVEAVRR CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEHHHHHH TGQGKLFEAFLRLKAQLESEGLFDPQRKRPLPAHPRAIGIVTSLQAAALRDVLTTLARRA CCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC PHLPVIVYPAPVQGSGAAEKLAAMVETANARREVDVLIVCRGGGSIEDLWSFNDEALARA CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHCCCHHHHHHH IAASALPVVSGVGHETDFTIADFAADLRAPTPTGAAELVSPQRALLLRELAERQAALARG HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHH LRRGLDARAQQLDWLARRLVSPAERLARQRTHLQQLALRLASAGARPVRDARARFALVML HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH RWQRVRPDAAAARQALAGWSQRLATALRHRHERAAARVSGCAARLEVLSPQRTLERGYAA HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCEE LIDTQTGRAVRAPGALAPQRRLTVHLAEGTADVSIADVQPRLDETF EEECCCCCEEECCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCC >Mature Secondary Structure PSDSFPSGPGGATFGRAGDTGDGVIPVSALNRAIGSMLERSFPLCWVSGEVSNFTRAAS CCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCC GHWYFSIKDKDAQMRCVMFRGRAQHAPFTPREGDRIEVRALVSMYEPRGEVQLNVEAVRR CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEHHHHHH TGQGKLFEAFLRLKAQLESEGLFDPQRKRPLPAHPRAIGIVTSLQAAALRDVLTTLARRA CCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC PHLPVIVYPAPVQGSGAAEKLAAMVETANARREVDVLIVCRGGGSIEDLWSFNDEALARA CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHCCCHHHHHHH IAASALPVVSGVGHETDFTIADFAADLRAPTPTGAAELVSPQRALLLRELAERQAALARG HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHH LRRGLDARAQQLDWLARRLVSPAERLARQRTHLQQLALRLASAGARPVRDARARFALVML HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH RWQRVRPDAAAARQALAGWSQRLATALRHRHERAAARVSGCAARLEVLSPQRTLERGYAA HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCEE LIDTQTGRAVRAPGALAPQRRLTVHLAEGTADVSIADVQPRLDETF EEECCCCCEEECCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA