| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028114
Identifier: 238028114
GI number: 238028114
Start: 2928724
End: 2929875
Strand: Reverse
Name: 238028114
Synonym: bglu_1g25650
Alternate gene names: NA
Gene position: 2929875-2928724 (Counterclockwise)
Preceding gene: 238028115
Following gene: 238028109
Centisome position: 75.0
GC content: 65.1
Gene sequence:
>1152_bases ATGAGCCTTTCGATCACGAGCCAATTCGATGCCGGCGCGATCGACGTCGTGGCGTGCGAGCGCCCCGATGCGATCCGGCT GCGCATTCGCGGCGACAATCAGTCCGAATTCGCGCAGTGGTTCTACTTTCGCCTGTCCGGTGCGCGCGGCGAGCGTTGCG TGATCGCATTCGAGAACGCGCACGCCTGCGCCTATCCGGCCGGCTGGCGAGACTATCGTGCGGTGGCGAGCTACGACCGC GTGAACTGGTTTCGCGTGCCGACCGAGTTCGACGGCACCGTGATGACGGTCGATCACACGCCGGAATTCGACACCATCTA CTACGCCTACTTCGAACCGTACAGCGAAGAGCGCCGCTCGGAGTTTCTCGGCGCTATCCAGCAGATGCCTCAGGCGAGCG TAGTCGAGCTCGGCCGCAGCGTCCAGGGGAGGCCCATGTCGCTGCTCGTGCTCGGTACGCCCGACGAGGCCGACACGAAG AAGAAGGTTTGGGTGATCGCGCGCCAGCATCCCGGCGAATCGATGGCCGAATGGTTCGTCGAGGGGCTGGTGAAGCGGCT CGCCGGCTGGGGCGACTGGGCCGGCGACGCGGTGGCGCGCAAGCTCTACGACCACGCGACGTTTTATATCGTGCCGAACA TGAACCCGGACGGCAGCGTGCTCGGCAACCTGCGGACCAACGCGGTCGGCGCGAACCTGAACCGCGAATGGATGGAGCCC GACGCCGCGCGCAGTCCCGAGGTGTACGTCGTGCGCGACGCACTGCATGCGATCGGCTGCGACATGTTCTTCGACATCCA TGGCGACGAGGATCTGCCGTATGTGTTCGTGGCAGGTTCCGAGATGCTGCCCGGCTTCACCGACCGTCAGCGCGAAGAGC AGCAGGCGTTCGTCGCCGCCTTCAAGCAGGCGAGCCCTGATTTCCAGGACCGCTACGGCTATCCGGCCTCCAAGTATCGA GAGGATGCGCTGAAGCTTGCCTCGAAATACGTCGGCCATGCGTTCGGCTGCCTGTCGCTGACGCTCGAGATGCCGTTCAA GGACAACGCCGACCTGCCGGACGAGCGCGTGGGCTGGAACGGTGAGCGCAGCGCGGCGCTCGGTGCGGCGATGCTGCTGC CGATCCTGAACCAGATCGAGCGATTCGCGTGA
Upstream 100 bases:
>100_bases GCGAGCCCGGCCTGCCCACGATTCGTTGGCGGGCCGGCTTGGGCGCCTCGGCCTGGCCTTTACCCGGTGCCTCGCGAGGG CGCCGCTTTCTGGAGATGAG
Downstream 100 bases:
>100_bases CGTGACGCGAGGTGTGGCGGCGGCGAGCCGCCATCGACTGGCGCTTATGACAAAAAGGCCGGAATGCGCAAGCATCCCGG CCTTTTTGTTTCGTCTGCGT
Product: zinc carboxypeptidase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 383; Mature: 382
Protein sequence:
>383_residues MSLSITSQFDAGAIDVVACERPDAIRLRIRGDNQSEFAQWFYFRLSGARGERCVIAFENAHACAYPAGWRDYRAVASYDR VNWFRVPTEFDGTVMTVDHTPEFDTIYYAYFEPYSEERRSEFLGAIQQMPQASVVELGRSVQGRPMSLLVLGTPDEADTK KKVWVIARQHPGESMAEWFVEGLVKRLAGWGDWAGDAVARKLYDHATFYIVPNMNPDGSVLGNLRTNAVGANLNREWMEP DAARSPEVYVVRDALHAIGCDMFFDIHGDEDLPYVFVAGSEMLPGFTDRQREEQQAFVAAFKQASPDFQDRYGYPASKYR EDALKLASKYVGHAFGCLSLTLEMPFKDNADLPDERVGWNGERSAALGAAMLLPILNQIERFA
Sequences:
>Translated_383_residues MSLSITSQFDAGAIDVVACERPDAIRLRIRGDNQSEFAQWFYFRLSGARGERCVIAFENAHACAYPAGWRDYRAVASYDR VNWFRVPTEFDGTVMTVDHTPEFDTIYYAYFEPYSEERRSEFLGAIQQMPQASVVELGRSVQGRPMSLLVLGTPDEADTK KKVWVIARQHPGESMAEWFVEGLVKRLAGWGDWAGDAVARKLYDHATFYIVPNMNPDGSVLGNLRTNAVGANLNREWMEP DAARSPEVYVVRDALHAIGCDMFFDIHGDEDLPYVFVAGSEMLPGFTDRQREEQQAFVAAFKQASPDFQDRYGYPASKYR EDALKLASKYVGHAFGCLSLTLEMPFKDNADLPDERVGWNGERSAALGAAMLLPILNQIERFA >Mature_382_residues SLSITSQFDAGAIDVVACERPDAIRLRIRGDNQSEFAQWFYFRLSGARGERCVIAFENAHACAYPAGWRDYRAVASYDRV NWFRVPTEFDGTVMTVDHTPEFDTIYYAYFEPYSEERRSEFLGAIQQMPQASVVELGRSVQGRPMSLLVLGTPDEADTKK KVWVIARQHPGESMAEWFVEGLVKRLAGWGDWAGDAVARKLYDHATFYIVPNMNPDGSVLGNLRTNAVGANLNREWMEPD AARSPEVYVVRDALHAIGCDMFFDIHGDEDLPYVFVAGSEMLPGFTDRQREEQQAFVAAFKQASPDFQDRYGYPASKYRE DALKLASKYVGHAFGCLSLTLEMPFKDNADLPDERVGWNGERSAALGAAMLLPILNQIERFA
Specific function: Unknown
COG id: COG2866
COG function: function code E; Predicted carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI190194403, Length=353, Percent_Identity=27.7620396600567, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI222352158, Length=353, Percent_Identity=24.929178470255, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI120444924, Length=327, Percent_Identity=25.0764525993884, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI31657119, Length=311, Percent_Identity=24.4372990353698, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI170763513, Length=330, Percent_Identity=23.6363636363636, Blast_Score=84, Evalue=3e-16, Organism=Caenorhabditis elegans, GI115533904, Length=372, Percent_Identity=25.5376344086022, Blast_Score=103, Evalue=2e-22, Organism=Caenorhabditis elegans, GI193202888, Length=191, Percent_Identity=29.3193717277487, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI24641847, Length=365, Percent_Identity=24.1095890410959, Blast_Score=98, Evalue=9e-21, Organism=Drosophila melanogaster, GI28571179, Length=365, Percent_Identity=24.1095890410959, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI161077807, Length=365, Percent_Identity=24.1095890410959, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24641845, Length=365, Percent_Identity=24.1095890410959, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24651466, Length=173, Percent_Identity=28.9017341040462, Blast_Score=69, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000834 [H]
Pfam domain/function: PF00246 Peptidase_M14 [H]
EC number: NA
Molecular weight: Translated: 43140; Mature: 43009
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLSITSQFDAGAIDVVACERPDAIRLRIRGDNQSEFAQWFYFRLSGARGERCVIAFENA CCCEECCCCCCCCEEEEEECCCCEEEEEEECCCHHHHHHEEEEEECCCCCCEEEEEEECC HACAYPAGWRDYRAVASYDRVNWFRVPTEFDGTVMTVDHTPEFDTIYYAYFEPYSEERRS CEEECCCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCEEEEEEECCHHHHHHH EFLGAIQQMPQASVVELGRSVQGRPMSLLVLGTPDEADTKKKVWVIARQHPGESMAEWFV HHHHHHHHCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHH EGLVKRLAGWGDWAGDAVARKLYDHATFYIVPNMNPDGSVLGNLRTNAVGANLNREWMEP HHHHHHHCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCEEECCCCCCCCCCCCHHHCCC DAARSPEVYVVRDALHAIGCDMFFDIHGDEDLPYVFVAGSEMLPGFTDRQREEQQAFVAA CCCCCCCEEEEHHHHHHHCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH FKQASPDFQDRYGYPASKYREDALKLASKYVGHAFGCLSLTLEMPFKDNADLPDERVGWN HHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCHHHCCCC GERSAALGAAMLLPILNQIERFA CCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SLSITSQFDAGAIDVVACERPDAIRLRIRGDNQSEFAQWFYFRLSGARGERCVIAFENA CCEECCCCCCCCEEEEEECCCCEEEEEEECCCHHHHHHEEEEEECCCCCCEEEEEEECC HACAYPAGWRDYRAVASYDRVNWFRVPTEFDGTVMTVDHTPEFDTIYYAYFEPYSEERRS CEEECCCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCEEEEEEECCHHHHHHH EFLGAIQQMPQASVVELGRSVQGRPMSLLVLGTPDEADTKKKVWVIARQHPGESMAEWFV HHHHHHHHCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHH EGLVKRLAGWGDWAGDAVARKLYDHATFYIVPNMNPDGSVLGNLRTNAVGANLNREWMEP HHHHHHHCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCEEECCCCCCCCCCCCHHHCCC DAARSPEVYVVRDALHAIGCDMFFDIHGDEDLPYVFVAGSEMLPGFTDRQREEQQAFVAA CCCCCCCEEEEHHHHHHHCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH FKQASPDFQDRYGYPASKYREDALKLASKYVGHAFGCLSLTLEMPFKDNADLPDERVGWN HHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCHHHCCCC GERSAALGAAMLLPILNQIERFA CCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8320209 [H]