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The map label for this gene is yjjV [H]

Identifier: 238028007

GI number: 238028007

Start: 2789850

End: 2790638

Strand: Reverse

Name: yjjV [H]

Synonym: bglu_1g24560

Alternate gene names: 238028007

Gene position: 2790638-2789850 (Counterclockwise)

Preceding gene: 238028008

Following gene: 238028006

Centisome position: 71.44

GC content: 70.09

Gene sequence:

>789_bases
ATGTGGATCGATACGCACTGCCATCTCGACGCCGGTGAATTCGACGCGGACCGCGACGCGGTGGCGTGCGCGGCGCGGGC
GGCGGGCGTGTCGGGCATCGTGATCCCGAGCGTCGGGCGCGGCAATTTCGAGGTGGTGCGCGAACTCGCGCATCGCACCG
CGGGCGGCAGCTACGCGCTCGGCATCCATCCGCTGTTGACTCCGGCCGCGCGCGACGAGGATCTCGAGCGCCTGCGCCTG
GAGATCGAGGCGAGCCTTGCCGATCCGCGCTTCGTCGCGATCGGCGAGATCGGCCTCGATTACTTCGTGGACGGACTCGA
CAATTCGCGCCAGGAGCATTTCTATTACGAGCAGCTGAGGCTCGCGCGCGAGTTCGACCTGCCGGTGCTCTGCCACGTAC
GCAAGTCGCAGGACCGCGTGCTGGCCGGCCTGCGCCGCTACGGCGTGCGATGCGGCATCGCGCACGCGTTCAACGGCAGC
TTTCAGCAGGCCGAGGCGTTCATCGCGCACGGGCTGCATCTCGGCTTCGGCGGCAACGTGACGTTCGAGCGCGCGCGACA
GATTCGGCGGCTCGCGGAACAACTGCCGCTGGAGGCGCTGGTGGTGGAAACCGACGCCCCCGACATCGCCCCCGAGTGGC
GCTACAAGCAGCGCAACACGCCCGACCAGGTGCCGCGCATCGGCGCGGCGATCGCCGCACTGCGCGGCAGCGCGGCCGAC
GCGATCGCGCGCGCGACCTCGGCGAATGCACTGGCGGCGTTGCCGCGTCTTAGCGGCGTGCCGGACTGA

Upstream 100 bases:

>100_bases
ATCGTCACGCACGACCCTGAGCTGGCCGCGCGCTGCGACCGTATCCTGCGGCTGCGCGACGGCGTGCTGCACGCGGAGCC
GGCCGTGCCCGCCTGAGGCC

Downstream 100 bases:

>100_bases
GCGAGGCGCCGCTCGGGCGCTTGGCCGCTTGGCCGCGCGGCTCCGTTCGTTGTTTTCGTCCTCTGGTTTCCTGTTTCCCG
CCCTCTGACGCGCCGGGTTG

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MWIDTHCHLDAGEFDADRDAVACAARAAGVSGIVIPSVGRGNFEVVRELAHRTAGGSYALGIHPLLTPAARDEDLERLRL
EIEASLADPRFVAIGEIGLDYFVDGLDNSRQEHFYYEQLRLAREFDLPVLCHVRKSQDRVLAGLRRYGVRCGIAHAFNGS
FQQAEAFIAHGLHLGFGGNVTFERARQIRRLAEQLPLEALVVETDAPDIAPEWRYKQRNTPDQVPRIGAAIAALRGSAAD
AIARATSANALAALPRLSGVPD

Sequences:

>Translated_262_residues
MWIDTHCHLDAGEFDADRDAVACAARAAGVSGIVIPSVGRGNFEVVRELAHRTAGGSYALGIHPLLTPAARDEDLERLRL
EIEASLADPRFVAIGEIGLDYFVDGLDNSRQEHFYYEQLRLAREFDLPVLCHVRKSQDRVLAGLRRYGVRCGIAHAFNGS
FQQAEAFIAHGLHLGFGGNVTFERARQIRRLAEQLPLEALVVETDAPDIAPEWRYKQRNTPDQVPRIGAAIAALRGSAAD
AIARATSANALAALPRLSGVPD
>Mature_262_residues
MWIDTHCHLDAGEFDADRDAVACAARAAGVSGIVIPSVGRGNFEVVRELAHRTAGGSYALGIHPLLTPAARDEDLERLRL
EIEASLADPRFVAIGEIGLDYFVDGLDNSRQEHFYYEQLRLAREFDLPVLCHVRKSQDRVLAGLRRYGVRCGIAHAFNGS
FQQAEAFIAHGLHLGFGGNVTFERARQIRRLAEQLPLEALVVETDAPDIAPEWRYKQRNTPDQVPRIGAAIAALRGSAAD
AIARATSANALAALPRLSGVPD

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=265, Percent_Identity=30.5660377358491, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI110349734, Length=265, Percent_Identity=30.5660377358491, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=29.7794117647059, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=29.296875, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI226061595, Length=235, Percent_Identity=30.6382978723404, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI225903424, Length=228, Percent_Identity=28.9473684210526, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI87082439, Length=250, Percent_Identity=40.4, Blast_Score=178, Evalue=3e-46,
Organism=Escherichia coli, GI1787342, Length=255, Percent_Identity=31.7647058823529, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI48994985, Length=259, Percent_Identity=30.8880308880309, Blast_Score=116, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI71980746, Length=268, Percent_Identity=28.7313432835821, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17559024, Length=277, Percent_Identity=23.826714801444, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24648690, Length=278, Percent_Identity=28.4172661870504, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI221330018, Length=220, Percent_Identity=29.5454545454545, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24586117, Length=289, Percent_Identity=25.9515570934256, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28583; Mature: 28583

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIDTHCHLDAGEFDADRDAVACAARAAGVSGIVIPSVGRGNFEVVRELAHRTAGGSYAL
CEECCEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEE
GIHPLLTPAARDEDLERLRLEIEASLADPRFVAIGEIGLDYFVDGLDNSRQEHFYYEQLR
ECCHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEHHCHHHHHHCCCCCHHHHHHHHHHH
LAREFDLPVLCHVRKSQDRVLAGLRRYGVRCGIAHAFNGSFQQAEAFIAHGLHLGFGGNV
HHHHCCCCEEEEECCHHHHHHHHHHHHCHHCCCHHHCCCCHHHHHHHHHHCEEECCCCCC
TFERARQIRRLAEQLPLEALVVETDAPDIAPEWRYKQRNTPDQVPRIGAAIAALRGSAAD
CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
AIARATSANALAALPRLSGVPD
HHHHHHCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MWIDTHCHLDAGEFDADRDAVACAARAAGVSGIVIPSVGRGNFEVVRELAHRTAGGSYAL
CEECCEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEE
GIHPLLTPAARDEDLERLRLEIEASLADPRFVAIGEIGLDYFVDGLDNSRQEHFYYEQLR
ECCHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEHHCHHHHHHCCCCCHHHHHHHHHHH
LAREFDLPVLCHVRKSQDRVLAGLRRYGVRCGIAHAFNGSFQQAEAFIAHGLHLGFGGNV
HHHHCCCCEEEEECCHHHHHHHHHHHHCHHCCCHHHCCCCHHHHHHHHHHCEEECCCCCC
TFERARQIRRLAEQLPLEALVVETDAPDIAPEWRYKQRNTPDQVPRIGAAIAALRGSAAD
CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
AIARATSANALAALPRLSGVPD
HHHHHHCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]