| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027975
Identifier: 238027975
GI number: 238027975
Start: 2733627
End: 2735186
Strand: Direct
Name: 238027975
Synonym: bglu_1g24220
Alternate gene names: NA
Gene position: 2733627-2735186 (Clockwise)
Preceding gene: 238027973
Following gene: 238027976
Centisome position: 69.98
GC content: 66.47
Gene sequence:
>1560_bases ATGGCTGCTTACCAACCGAAGAACGGGGTGAAGTCGACGGGCACCCGCAAGGTGAAGGATTCGGTCGAGCTGTATTACGC CGACCGTTTGGAAAAGGACGCGAATCTGGCGGTCGGCAGCGGCGAGACGCCGGAGCTGTTCCGCTGGAACGGCGTGTTCT GGGAAGCCCAGCGTGACGTCGCACTCGAACAAGACGCGCTCCGCCAGCTCCAAAAGCTGGAACCCGCGAAGTACAGCGCG AGCAAGGCCCGCTCGATGGTCGAGACCGCCATTACGCGTCTGGCCGGCCACAAGCCCCTGCCCGTGCCGCAGAAGTCGAC CGGCGTGCTCGTGCCGTTGCGGGACGGTCTGCTCGAAGTGCTCCCGTCCGGCGTGGTGAAGGCCCACAAGCCGGCCCCGC ATTTCGGCGTCACGCACGCCATCAACGCGTCCATCGACTGGACGCGCGTCGGTGCGGAGGGCACGTATGGCCTGCTCCCG ATGACCCCGGACAGCCGCTTCGGCCGCTTCATCATGCAGGTCCAGCCGAGCCCGGCGATGCGCGACTACCTTGCCGAGTG CTTCGGGTCGACGCTCTCCACGATGAACGTCCAGAAGGCGATCATTCTCGAAGGTACCGGTGCCAACGGGAAAAGCTTGT GCCTGCAGATCCTCTCGGCCTTCCACGCCAACCCGGTAGCGTTCGACCTGTCGCGTCTGGACGGGGAGTTCAACACCGAG CCGCTGGTCCACGCCACGCTGGTCACGGTGTCGGAAGCGCCCCCGCGTAAGCGCCCGATCAACGAGAACCTGTTCAAAGC GTGGGTCGCCCGTGACCCGGTGTCGGTGAACCGCAAGAACCGCGTGCCCCTGACGGTGAAGCCGCGTGCCTCGTGGGTGC TGGCCATGAACGAAGCCATGGGCTTCTCGGACATGTCCCACGGGTTCCTGCGTCGCATTGCCAACGTGCCGTTCACGCAG ACGATCCGCGCCGAGGACCAGATCCCGGACCTCGACCGCCTGATCACGGAGAACCCCGACGAGATGGCGATCGCGCTGGA TTGGCTGCTGGCCGGCCTTATCGCGCTGACCAAGCGCGGCCGTTTCATGAGCGAGGACGAGCTGCCCGAGGAGGTCCGTT CGCATAAGGTGTCCCTGCGCAAGTCGAACGACACCGCGCTGGAATGGGCGGACGTGGTGGACGCCGGTCAAGACCCAGCC TACCCGAACCAGTGGGCGGACAAGGTGGTGGTCTACCGCGCGTACCGCGACTTCTGCGCGGACAACGGTCGCCACCCGGT GGAAGCGAACGAGTTCTGGAAGCGTCTCCGTCGTGACTTGCAGGTGTCCAAGGGGATCGACATCGGCGCAGCGGAGAATA ACCGTCGCGCCCCGAAGGACTCGACCGGCAACCGCGCCCGCCTCGTGCGCATGCGCGCCGATGGGGTCCCGTCCGTGTCG CTCGCCGTGGCCGGGGCCCGCGACACCGCGTCGGTGAAGCTGCCGCTGCCGGAGATCGAGGACTTCTCCGACCACTTCGG CAAGCCCTCGGAGCATGGCCACGGCCCCGCTCGCGCCTAA
Upstream 100 bases:
>100_bases CACGGGCGGGACGAGCGCGATCATCCGTCCTGTGCAGCGCTGCTGGGCCCCGAAGTTAAAAGCAGCGCCGCAGAACGATG TCGCAAACGAAGGAACAACG
Downstream 100 bases:
>100_bases CCTCCCCGCCCGACGTTGCCCCCTCCCAGCCCGGCCCAGCTCCGGGCTTTTCGCATGGTGCCCCGCCCCAGGCCCACGGC GACGTGCGGGGTGCGGGATG
Product: phage/plasmid primase P4
Products: NA
Alternate protein names: Phage/Plasmid Primase P4 Family; P4 Family Phage/Plasmid Primase; ATPase-Like Protein; Phage Primase; Phage/Plasmid Primase P4 C-Terminal Protein; Nucleoside Triphosphatase D5 Family; Phage/Plasmid Primase P4 C-Terminal; Phage/Plasmid Primase P4-Like Protein
Number of amino acids: Translated: 519; Mature: 518
Protein sequence:
>519_residues MAAYQPKNGVKSTGTRKVKDSVELYYADRLEKDANLAVGSGETPELFRWNGVFWEAQRDVALEQDALRQLQKLEPAKYSA SKARSMVETAITRLAGHKPLPVPQKSTGVLVPLRDGLLEVLPSGVVKAHKPAPHFGVTHAINASIDWTRVGAEGTYGLLP MTPDSRFGRFIMQVQPSPAMRDYLAECFGSTLSTMNVQKAIILEGTGANGKSLCLQILSAFHANPVAFDLSRLDGEFNTE PLVHATLVTVSEAPPRKRPINENLFKAWVARDPVSVNRKNRVPLTVKPRASWVLAMNEAMGFSDMSHGFLRRIANVPFTQ TIRAEDQIPDLDRLITENPDEMAIALDWLLAGLIALTKRGRFMSEDELPEEVRSHKVSLRKSNDTALEWADVVDAGQDPA YPNQWADKVVVYRAYRDFCADNGRHPVEANEFWKRLRRDLQVSKGIDIGAAENNRRAPKDSTGNRARLVRMRADGVPSVS LAVAGARDTASVKLPLPEIEDFSDHFGKPSEHGHGPARA
Sequences:
>Translated_519_residues MAAYQPKNGVKSTGTRKVKDSVELYYADRLEKDANLAVGSGETPELFRWNGVFWEAQRDVALEQDALRQLQKLEPAKYSA SKARSMVETAITRLAGHKPLPVPQKSTGVLVPLRDGLLEVLPSGVVKAHKPAPHFGVTHAINASIDWTRVGAEGTYGLLP MTPDSRFGRFIMQVQPSPAMRDYLAECFGSTLSTMNVQKAIILEGTGANGKSLCLQILSAFHANPVAFDLSRLDGEFNTE PLVHATLVTVSEAPPRKRPINENLFKAWVARDPVSVNRKNRVPLTVKPRASWVLAMNEAMGFSDMSHGFLRRIANVPFTQ TIRAEDQIPDLDRLITENPDEMAIALDWLLAGLIALTKRGRFMSEDELPEEVRSHKVSLRKSNDTALEWADVVDAGQDPA YPNQWADKVVVYRAYRDFCADNGRHPVEANEFWKRLRRDLQVSKGIDIGAAENNRRAPKDSTGNRARLVRMRADGVPSVS LAVAGARDTASVKLPLPEIEDFSDHFGKPSEHGHGPARA >Mature_518_residues AAYQPKNGVKSTGTRKVKDSVELYYADRLEKDANLAVGSGETPELFRWNGVFWEAQRDVALEQDALRQLQKLEPAKYSAS KARSMVETAITRLAGHKPLPVPQKSTGVLVPLRDGLLEVLPSGVVKAHKPAPHFGVTHAINASIDWTRVGAEGTYGLLPM TPDSRFGRFIMQVQPSPAMRDYLAECFGSTLSTMNVQKAIILEGTGANGKSLCLQILSAFHANPVAFDLSRLDGEFNTEP LVHATLVTVSEAPPRKRPINENLFKAWVARDPVSVNRKNRVPLTVKPRASWVLAMNEAMGFSDMSHGFLRRIANVPFTQT IRAEDQIPDLDRLITENPDEMAIALDWLLAGLIALTKRGRFMSEDELPEEVRSHKVSLRKSNDTALEWADVVDAGQDPAY PNQWADKVVVYRAYRDFCADNGRHPVEANEFWKRLRRDLQVSKGIDIGAAENNRRAPKDSTGNRARLVRMRADGVPSVSL AVAGARDTASVKLPLPEIEDFSDHFGKPSEHGHGPARA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57391; Mature: 57260
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAYQPKNGVKSTGTRKVKDSVELYYADRLEKDANLAVGSGETPELFRWNGVFWEAQRDV CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEECCEEEECCCCH ALEQDALRQLQKLEPAKYSASKARSMVETAITRLAGHKPLPVPQKSTGVLVPLRDGLLEV HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHH LPSGVVKAHKPAPHFGVTHAINASIDWTRVGAEGTYGLLPMTPDSRFGRFIMQVQPSPAM HCHHHHCCCCCCCCCCCCEEECCCCCEEEECCCCCEEEEECCCCHHHCEEEEEECCCHHH RDYLAECFGSTLSTMNVQKAIILEGTGANGKSLCLQILSAFHANPVAFDLSRLDGEFNTE HHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHCCCCCCCC PLVHATLVTVSEAPPRKRPINENLFKAWVARDPVSVNRKNRVPLTVKPRASWVLAMNEAM CEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEHHHC GFSDMSHGFLRRIANVPFTQTIRAEDQIPDLDRLITENPDEMAIALDWLLAGLIALTKRG CCCHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC RFMSEDELPEEVRSHKVSLRKSNDTALEWADVVDAGQDPAYPNQWADKVVVYRAYRDFCA CCCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH DNGRHPVEANEFWKRLRRDLQVSKGIDIGAAENNRRAPKDSTGNRARLVRMRADGVPSVS CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEE LAVAGARDTASVKLPLPEIEDFSDHFGKPSEHGHGPARA EEEECCCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure AAYQPKNGVKSTGTRKVKDSVELYYADRLEKDANLAVGSGETPELFRWNGVFWEAQRDV CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEECCEEEECCCCH ALEQDALRQLQKLEPAKYSASKARSMVETAITRLAGHKPLPVPQKSTGVLVPLRDGLLEV HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHH LPSGVVKAHKPAPHFGVTHAINASIDWTRVGAEGTYGLLPMTPDSRFGRFIMQVQPSPAM HCHHHHCCCCCCCCCCCCEEECCCCCEEEECCCCCEEEEECCCCHHHCEEEEEECCCHHH RDYLAECFGSTLSTMNVQKAIILEGTGANGKSLCLQILSAFHANPVAFDLSRLDGEFNTE HHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHCCCCCCCC PLVHATLVTVSEAPPRKRPINENLFKAWVARDPVSVNRKNRVPLTVKPRASWVLAMNEAM CEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEHHHC GFSDMSHGFLRRIANVPFTQTIRAEDQIPDLDRLITENPDEMAIALDWLLAGLIALTKRG CCCHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC RFMSEDELPEEVRSHKVSLRKSNDTALEWADVVDAGQDPAYPNQWADKVVVYRAYRDFCA CCCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH DNGRHPVEANEFWKRLRRDLQVSKGIDIGAAENNRRAPKDSTGNRARLVRMRADGVPSVS CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEE LAVAGARDTASVKLPLPEIEDFSDHFGKPSEHGHGPARA EEEECCCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA