| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is helD [H]
Identifier: 238027963
GI number: 238027963
Start: 2693811
End: 2696648
Strand: Direct
Name: helD [H]
Synonym: bglu_1g24090
Alternate gene names: 238027963
Gene position: 2693811-2696648 (Clockwise)
Preceding gene: 238027962
Following gene: 238027968
Centisome position: 68.96
GC content: 63.88
Gene sequence:
>2838_bases ATGAAAAAAGAATGGGCTCCCTCCACGTGGGGCCGAAAACTGACACGATCGCCGGACTGGCGCCTCTTCCTTGAAGGCTT GAAACTGTCGTTGACGGTGGATGGAAAAACGCACGCCGTCAACGTCGACGACGCCGGCTCGTACCAGGTGAATCCGGGCG TGTTCTGGACCGACGTCACACTCCACCCAAACCCCTCGCGGTTCGTGAAAGTGGACGGGCTGCCCAACGCCCGAGGGACC GATTTGACCAGTGCTGTGGAAGCTGCGCTGGTCGAGAAGCAAATCCGCCAGGACGTGGCGTTCGTCCGCGACGCACATCA GACCGTGCTCGATTGGCTGGACCACAAGACCCAGCAAGAGCAGGCTGCAGAAGCCGGTCGGCGATGGATCACGCACGAGG TGCAGGCGGCCATTGAAGCGGCCCGACCGTCCATCGACGTGAAGGCCGTTCGTGCGCGCATGACGAAGGCCAACGTGAAC GCCAGGCTGGGAAAAGACGCTGCCGATGTGGAACGCTCCCTCGTCCAATGGGAAACCGACCATCGCCCCTACTGGGCCTC CCTCAACGTGGCCCATACGGAGCGGGAGCTGAAAGCGTGCAAGGACCTGTTCGACCGGGTGGAGCGCAAGCCTCTGACCG AGGAGCAAGCGCGGGCCGTGATCTGCTTCGACAACCGCGTGCAGGTGGTTGCGTCGGCCGGCTCGGGCAAGACGTCCACC ATGGTGGCAAAGGCCGCCTACGCGATCGACCGGGGCTTCGTCGCACCGAAGCGGATCGTCATGCTGGCCTTCAACAAGCA GGCCGCCGACGAACTCGCGGACCGTGCCGCCAAATCCTTCGAGCGGCTCGCCATGAGCAACGTGGCGGTGGAGGCCTCAA CCTTTCATGCCCTGGGCCTTCGCATCATCGGTAAGGCCACGAAGGAAAAGCCTGACGTCCCGGATTGGGCCACTGACACC GCCGGCGGCATCAGCAAGCTGACCGCGATCGTCGATCAGCTCAAGGACCGCTCCGCCACCTTCCGAACCCAATGGGACCT CTTCCGGTTCGTGTTTGGCAAGGATTTGCCTGCGTTCGGATCGAACGGCTCACCCGACGTCTGGGACGATCAAGGCAACG GCCGAACCCTCACCGCCGACGGAAAGCGCGTGCGCAGCCAGGAAGAGGCCACCCTCTCCAACTGGCTGTTTTACAACGGC GTGGACTACCTCTACGAAGAGCGGTACAAGTTCAAGACCGCCGACGAGGACCATCGTCAATACCGCCCGGACTTCTATTA CCCAGGCATTGATCTCTACCACGAGCACTTCGCCCTGGACGCCAACGGCAAGGCCCCGCCTCACTTTACCGACTACGTTG CTGGCGTCGAATGGAAGCGCACGTTGCATCGCGAACGCGGCACGGCGTTGATCGAGACGACGTCGCACCAGGTCCGCACC GGCGACGTGTTCAAGCACCTGGCCAACGAGCTGACCCGCCGGGGCATCCAACTCGACCCCAACCCGGATCGCGAGATTCC CTCGGGCGGTCAAAAGCCCATGGAGCCCGAGGAACTGGTGAACCTGCTGAGAACGTTCATCAGCCACGCCAAAAGCAACT GCTTGACCGCGGCGGCGCTGCGCCAACGCCTGGACGCCCTGCCGGACGATGCGTTCAAGTACCGGTACCGCATGTTCCTC GACATCGCCGAGCCCATCATCAAAGCATGGGACGCCGCGTTGGCGGCTGAGGACGGCATCGACTTCGAGGACATGCTCAA CCTGGCGGCTGAGCATCTGGAAAGCGGTCGATACGAGGCGCCCTACGAGCTGGTCATGGCCGACGAGTTCCAAGACGCCT CACGGGCTCGGGCCCGACTGTGCCGCGCCTTGGTACAGAAGCCCGGCCGATACCTGTTCGCCGTGGGCGACGACTGGCAG TCCATCAACCGCTTCGCCGGCGCGGACGTGTCGGTGATGACCGGCTTCCGGGAATGGTTCGGCCACGGACAGGTTCTCAA GCTCGAACAGACGTTCCGCTGTCCGCAAGCGCTGTGCGACGTGTCCAGCCGGTTCGTGTCGAAAAACCCAACGCAGATCA GCAAACGCGTGACGTCGGTCGCCCCCGCCATCGGCCCCGTGCTGCAAGCGTTCCAAGTGGACAACAAGGAAAAGCTGGCC GACGCCATCGACCAGTTCGTGATGAAACTGGCCCATGGGGTCCAGGACGGCAGCATCCCGCCTGGGCACGATGGGAAGGT TTCGGTCTTCGTGCTTGGCCGGTACAACGCCGATCGGCAGTACGTCCCGGCCAACAAGGCCCGCTTCGAGCGCTGGGTGG ACGTGTCGTTCCTCACCGTCCACCGATCGAAGGGAAGTGAAGCCGACTACGTGATCTTGCCGGAAATGCTGAGCGTGATG CGCGGGCGTAGCTTCCCGAACACGCGCGCTGACGATCCGGTACTGGCGTTGGCCATGCCCGCCGGGGACAACTACCCTGA CGGGGAAGAGCGTCGACTGTTCTACGTGGCCCTGACCAGGGCGCGGCGCAGCGTGGCCATGTTCACGGCACGCGGTCAGC GTTCGAGCTTCTTGCGGGAACTCGAGCAGGACGGCGCGGTGTCGATCACCGACACCGACGGCCAGGTCGTTCAGGAGGAA GAATGCCCCTCGTGCAGACGAGGGGTTCTGGTCTTGCGCAACGGCCCCTACGGGGAGTTTCGCTCCTGCTCCAACTTCCC TGCCTGCAAGTACAAGCCCAAGAAGCGGGGAAACGCGCCAGTGCCTGCGACCACCCACGGAGGGAGGCCGGCCCCAGCCA ACCGCCGCCCCTCAGCGGCGCCCACCTCGCGTCGCTGA
Upstream 100 bases:
>100_bases GCATGCTCGGCCCGCCTTCCAAGCACTGTCAGGCTATCATGGCGCGACCGGGTCTCGGGGATGACCGAGACCCGATTCCG GGGCTATTGCAGGGCAAGCA
Downstream 100 bases:
>100_bases CCGCCACCGCCCGCGCCCGTTCGGGTGCCCTGCGCGGGCATTCCGAGGGCGCGACGGCCCAACGCTCAACCTTGCAGCGG CGGGAGGGTCCGAACGATCC
Product: UvrD/REP helicase
Products: NA
Alternate protein names: 75 kDa helicase [H]
Number of amino acids: Translated: 945; Mature: 945
Protein sequence:
>945_residues MKKEWAPSTWGRKLTRSPDWRLFLEGLKLSLTVDGKTHAVNVDDAGSYQVNPGVFWTDVTLHPNPSRFVKVDGLPNARGT DLTSAVEAALVEKQIRQDVAFVRDAHQTVLDWLDHKTQQEQAAEAGRRWITHEVQAAIEAARPSIDVKAVRARMTKANVN ARLGKDAADVERSLVQWETDHRPYWASLNVAHTERELKACKDLFDRVERKPLTEEQARAVICFDNRVQVVASAGSGKTST MVAKAAYAIDRGFVAPKRIVMLAFNKQAADELADRAAKSFERLAMSNVAVEASTFHALGLRIIGKATKEKPDVPDWATDT AGGISKLTAIVDQLKDRSATFRTQWDLFRFVFGKDLPAFGSNGSPDVWDDQGNGRTLTADGKRVRSQEEATLSNWLFYNG VDYLYEERYKFKTADEDHRQYRPDFYYPGIDLYHEHFALDANGKAPPHFTDYVAGVEWKRTLHRERGTALIETTSHQVRT GDVFKHLANELTRRGIQLDPNPDREIPSGGQKPMEPEELVNLLRTFISHAKSNCLTAAALRQRLDALPDDAFKYRYRMFL DIAEPIIKAWDAALAAEDGIDFEDMLNLAAEHLESGRYEAPYELVMADEFQDASRARARLCRALVQKPGRYLFAVGDDWQ SINRFAGADVSVMTGFREWFGHGQVLKLEQTFRCPQALCDVSSRFVSKNPTQISKRVTSVAPAIGPVLQAFQVDNKEKLA DAIDQFVMKLAHGVQDGSIPPGHDGKVSVFVLGRYNADRQYVPANKARFERWVDVSFLTVHRSKGSEADYVILPEMLSVM RGRSFPNTRADDPVLALAMPAGDNYPDGEERRLFYVALTRARRSVAMFTARGQRSSFLRELEQDGAVSITDTDGQVVQEE ECPSCRRGVLVLRNGPYGEFRSCSNFPACKYKPKKRGNAPVPATTHGGRPAPANRRPSAAPTSRR
Sequences:
>Translated_945_residues MKKEWAPSTWGRKLTRSPDWRLFLEGLKLSLTVDGKTHAVNVDDAGSYQVNPGVFWTDVTLHPNPSRFVKVDGLPNARGT DLTSAVEAALVEKQIRQDVAFVRDAHQTVLDWLDHKTQQEQAAEAGRRWITHEVQAAIEAARPSIDVKAVRARMTKANVN ARLGKDAADVERSLVQWETDHRPYWASLNVAHTERELKACKDLFDRVERKPLTEEQARAVICFDNRVQVVASAGSGKTST MVAKAAYAIDRGFVAPKRIVMLAFNKQAADELADRAAKSFERLAMSNVAVEASTFHALGLRIIGKATKEKPDVPDWATDT AGGISKLTAIVDQLKDRSATFRTQWDLFRFVFGKDLPAFGSNGSPDVWDDQGNGRTLTADGKRVRSQEEATLSNWLFYNG VDYLYEERYKFKTADEDHRQYRPDFYYPGIDLYHEHFALDANGKAPPHFTDYVAGVEWKRTLHRERGTALIETTSHQVRT GDVFKHLANELTRRGIQLDPNPDREIPSGGQKPMEPEELVNLLRTFISHAKSNCLTAAALRQRLDALPDDAFKYRYRMFL DIAEPIIKAWDAALAAEDGIDFEDMLNLAAEHLESGRYEAPYELVMADEFQDASRARARLCRALVQKPGRYLFAVGDDWQ SINRFAGADVSVMTGFREWFGHGQVLKLEQTFRCPQALCDVSSRFVSKNPTQISKRVTSVAPAIGPVLQAFQVDNKEKLA DAIDQFVMKLAHGVQDGSIPPGHDGKVSVFVLGRYNADRQYVPANKARFERWVDVSFLTVHRSKGSEADYVILPEMLSVM RGRSFPNTRADDPVLALAMPAGDNYPDGEERRLFYVALTRARRSVAMFTARGQRSSFLRELEQDGAVSITDTDGQVVQEE ECPSCRRGVLVLRNGPYGEFRSCSNFPACKYKPKKRGNAPVPATTHGGRPAPANRRPSAAPTSRR >Mature_945_residues MKKEWAPSTWGRKLTRSPDWRLFLEGLKLSLTVDGKTHAVNVDDAGSYQVNPGVFWTDVTLHPNPSRFVKVDGLPNARGT DLTSAVEAALVEKQIRQDVAFVRDAHQTVLDWLDHKTQQEQAAEAGRRWITHEVQAAIEAARPSIDVKAVRARMTKANVN ARLGKDAADVERSLVQWETDHRPYWASLNVAHTERELKACKDLFDRVERKPLTEEQARAVICFDNRVQVVASAGSGKTST MVAKAAYAIDRGFVAPKRIVMLAFNKQAADELADRAAKSFERLAMSNVAVEASTFHALGLRIIGKATKEKPDVPDWATDT AGGISKLTAIVDQLKDRSATFRTQWDLFRFVFGKDLPAFGSNGSPDVWDDQGNGRTLTADGKRVRSQEEATLSNWLFYNG VDYLYEERYKFKTADEDHRQYRPDFYYPGIDLYHEHFALDANGKAPPHFTDYVAGVEWKRTLHRERGTALIETTSHQVRT GDVFKHLANELTRRGIQLDPNPDREIPSGGQKPMEPEELVNLLRTFISHAKSNCLTAAALRQRLDALPDDAFKYRYRMFL DIAEPIIKAWDAALAAEDGIDFEDMLNLAAEHLESGRYEAPYELVMADEFQDASRARARLCRALVQKPGRYLFAVGDDWQ SINRFAGADVSVMTGFREWFGHGQVLKLEQTFRCPQALCDVSSRFVSKNPTQISKRVTSVAPAIGPVLQAFQVDNKEKLA DAIDQFVMKLAHGVQDGSIPPGHDGKVSVFVLGRYNADRQYVPANKARFERWVDVSFLTVHRSKGSEADYVILPEMLSVM RGRSFPNTRADDPVLALAMPAGDNYPDGEERRLFYVALTRARRSVAMFTARGQRSSFLRELEQDGAVSITDTDGQVVQEE ECPSCRRGVLVLRNGPYGEFRSCSNFPACKYKPKKRGNAPVPATTHGGRPAPANRRPSAAPTSRR
Specific function: Helicase IV catalyzes the unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand in a reaction that is dependent upon the hydrolysis of ATP [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase ATP-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1787196, Length=317, Percent_Identity=34.384858044164, Blast_Score=170, Evalue=4e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000212 - InterPro: IPR014016 - InterPro: IPR022161 - InterPro: IPR003661 [H]
Pfam domain/function: PF12462 Nucleolin_N; PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 105904; Mature: 105904
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKEWAPSTWGRKLTRSPDWRLFLEGLKLSLTVDGKTHAVNVDDAGSYQVNPGVFWTDVT CCCCCCCCHHCCCCCCCCCHHEEEECCEEEEEECCCEEEEECCCCCCEEECCCEEEEEEE LHPNPSRFVKVDGLPNARGTDLTSAVEAALVEKQIRQDVAFVRDAHQTVLDWLDHKTQQE ECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH QAAEAGRRWITHEVQAAIEAARPSIDVKAVRARMTKANVNARLGKDAADVERSLVQWETD HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHCCC HRPYWASLNVAHTERELKACKDLFDRVERKPLTEEQARAVICFDNRVQVVASAGSGKTST CCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCEEEEEECCCCCHHH MVAKAAYAIDRGFVAPKRIVMLAFNKQAADELADRAAKSFERLAMSNVAVEASTFHALGL HHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHH RIIGKATKEKPDVPDWATDTAGGISKLTAIVDQLKDRSATFRTQWDLFRFVFGKDLPAFG HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC SNGSPDVWDDQGNGRTLTADGKRVRSQEEATLSNWLFYNGVDYLYEERYKFKTADEDHRQ CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHH YRPDFYYPGIDLYHEHFALDANGKAPPHFTDYVAGVEWKRTLHRERGTALIETTSHQVRT CCCCCCCCCHHHHHHHEEECCCCCCCCCHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCH GDVFKHLANELTRRGIQLDPNPDREIPSGGQKPMEPEELVNLLRTFISHAKSNCLTAAAL HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH RQRLDALPDDAFKYRYRMFLDIAEPIIKAWDAALAAEDGIDFEDMLNLAAEHLESGRYEA HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC PYELVMADEFQDASRARARLCRALVQKPGRYLFAVGDDWQSINRFAGADVSVMTGFREWF CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHH GHGQVLKLEQTFRCPQALCDVSSRFVSKNPTQISKRVTSVAPAIGPVLQAFQVDNKEKLA CCCCEEEEHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH DAIDQFVMKLAHGVQDGSIPPGHDGKVSVFVLGRYNADRQYVPANKARFERWVDVSFLTV HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHCEEEEEE HRSKGSEADYVILPEMLSVMRGRSFPNTRADDPVLALAMPAGDNYPDGEERRLFYVALTR ECCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEHH ARRSVAMFTARGQRSSFLRELEQDGAVSITDTDGQVVQEEECPSCRRGVLVLRNGPYGEF HHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCEECCCCCCCHHCCEEEEECCCCCCC RSCSNFPACKYKPKKRGNAPVPATTHGGRPAPANRRPSAAPTSRR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKKEWAPSTWGRKLTRSPDWRLFLEGLKLSLTVDGKTHAVNVDDAGSYQVNPGVFWTDVT CCCCCCCCHHCCCCCCCCCHHEEEECCEEEEEECCCEEEEECCCCCCEEECCCEEEEEEE LHPNPSRFVKVDGLPNARGTDLTSAVEAALVEKQIRQDVAFVRDAHQTVLDWLDHKTQQE ECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH QAAEAGRRWITHEVQAAIEAARPSIDVKAVRARMTKANVNARLGKDAADVERSLVQWETD HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHCCC HRPYWASLNVAHTERELKACKDLFDRVERKPLTEEQARAVICFDNRVQVVASAGSGKTST CCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCEEEEEECCCCCHHH MVAKAAYAIDRGFVAPKRIVMLAFNKQAADELADRAAKSFERLAMSNVAVEASTFHALGL HHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHH RIIGKATKEKPDVPDWATDTAGGISKLTAIVDQLKDRSATFRTQWDLFRFVFGKDLPAFG HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC SNGSPDVWDDQGNGRTLTADGKRVRSQEEATLSNWLFYNGVDYLYEERYKFKTADEDHRQ CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHH YRPDFYYPGIDLYHEHFALDANGKAPPHFTDYVAGVEWKRTLHRERGTALIETTSHQVRT CCCCCCCCCHHHHHHHEEECCCCCCCCCHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCH GDVFKHLANELTRRGIQLDPNPDREIPSGGQKPMEPEELVNLLRTFISHAKSNCLTAAAL HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH RQRLDALPDDAFKYRYRMFLDIAEPIIKAWDAALAAEDGIDFEDMLNLAAEHLESGRYEA HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC PYELVMADEFQDASRARARLCRALVQKPGRYLFAVGDDWQSINRFAGADVSVMTGFREWF CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHH GHGQVLKLEQTFRCPQALCDVSSRFVSKNPTQISKRVTSVAPAIGPVLQAFQVDNKEKLA CCCCEEEEHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH DAIDQFVMKLAHGVQDGSIPPGHDGKVSVFVLGRYNADRQYVPANKARFERWVDVSFLTV HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHCEEEEEE HRSKGSEADYVILPEMLSVMRGRSFPNTRADDPVLALAMPAGDNYPDGEERRLFYVALTR ECCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEHH ARRSVAMFTARGQRSSFLRELEQDGAVSITDTDGQVVQEEECPSCRRGVLVLRNGPYGEF HHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCEECCCCCCCHHCCEEEEECCCCCCC RSCSNFPACKYKPKKRGNAPVPATTHGGRPAPANRRPSAAPTSRR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2542273; 8905232; 9278503 [H]