| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is nmoT [H]
Identifier: 238027904
GI number: 238027904
Start: 2575396
End: 2576913
Strand: Direct
Name: nmoT [H]
Synonym: bglu_1g23450
Alternate gene names: 238027904
Gene position: 2575396-2576913 (Clockwise)
Preceding gene: 238027903
Following gene: 238027905
Centisome position: 65.93
GC content: 64.49
Gene sequence:
>1518_bases GTGATCACGGTGGGCATATTGGCCAAGATCAGGCGGATGTATTTCCGCGAGAAGGTCCCGCTGCGCGAGATTGCGCGGCG TACGGGCCTGTCCCGAAACACGGTGCGCCGCTGGCTGCGGCAGACTGATGCCGTCGAGCCGAAGTATCCGAAGCGCGTCA GCCCGAGCGTCATCGACGACTGGGCCGCACAGCTGACAGGTTGGCTGCGTGCCGACAGTCATCGCCCAAAGCGTGACCGG CGCACCGCCCGGTTCATGTTCGAGGCGATCCGCGCCGAGGGTTACGCCGGCAGTTATGGCCGCGTGAGCGCATTCGTGAG GCGTTGGCACGAGGAGCAGGCTGAGGCGCCTCGCAGGAAGGCCTTCGTGCCGCTCGCCTTCGAACCCGGCGAAGCCTTCC AGTTTGACTGGAGCTGCGAATATGCGTTTGTTGGCGGGCTGCGGCGACGCTTGGAGGTCGCCCACGTCAAACTTAACTCC AGCCGGGCGTTCTGGCTGGTCGCCTATCCCACCCAGAGTCACGAGATGATGCTGTTCGACGCACACGCGCGCGCATTCGC CGCGTTGGGCGGCGTGCCCGGGCGCGGCATCTACGACAACATAAAGACCGCCGTGGACAAGGTCGGCCGCGGCAAGGAGC GCGCGGTCAACGCGCGCTTCGAAGCAATGTGCAGTCACTACCTGTTCGAGCCAGAGTTCTGCAACCGTGCCGCCGGCTGG GAGAAAGGCATCGTCGAGAAGAACGTTCAGGACCGGCGACGTCAGATCTGGCACGAAGCAGCGCTACGGCGCTGGGAAAC GCTGGAGATCCTAAACGAATGGGTCGCTGGTCAGTGTCGTGAGGCCTGGCAGATGCGGCACCCGCAGTGGCCCGAGCTGA CAGTCGAGGACGTGCTGCAGGACGAGCGCATCAGGCTGATGCCCAATCCACGGCCGTTCGACGGCTACATCGAGCAGACC CTGCGAGTCTCGTCGACCAGTCTGATTCACTTCCAGCGCAACCGCTACAGCGTGCCCACCGAGTACACGAACCAGTTGGT GAGCGTGCGCTGCTATCCGGCATATCTCAGCGTCGTCGCCAACGCCCAGGAGATCGCACGCCACGAACGCAGCTTCGAGC GGCACATGACCTTCTACGATTGGCGCCACTACGTCACGCTGGTCGAACGCAAACCCGGCGCACTGCGCAACGGCGCACCG TTCATCACGATGCCGCAGCCGCTGCAACTGCTGCAGCGGCATCTGCTGAAACACCCGGGCGGCGATCGCGTCATGACGCA GGTGCTCGCTGCGGTGCGCGAACACGGGCTCGATGCGGTGCTGCTCGCCGTACAGGCTGCGCTGGATTCAGGACGCCCCA GCGCAGAGCACGTTCTGAACGTGCTGAGCCGGTTGAAGGCACCCACCACGAGCACCAACCTCGCGACGACGAAACTCCAG CTTACCGAAGAGCCGGCCGCCGACGTGAGCCGCTACGAAACCCTGCGTGCCAACCCACCGGAGGACCGTCATGTCTAA
Upstream 100 bases:
>100_bases ATGTCCGCACAGAACTGACCCACTAGAGCTGAAAATTTTCATCGAATTTTGACCCACGTGATTGAATGCCCTGCTCAATC TTTGAGCAGGGGATACAAAG
Downstream 100 bases:
>100_bases CGACATCGCCGCCCAGCTCAAGGGGCTCAAACTGCATGGCATGGCGAGCACGTGGCCGGAGCTGCTGGCGCAGTCGCGTC ACACGGAGTTCAACCCGGAG
Product: integrase catalytic subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 505; Mature: 505
Protein sequence:
>505_residues MITVGILAKIRRMYFREKVPLREIARRTGLSRNTVRRWLRQTDAVEPKYPKRVSPSVIDDWAAQLTGWLRADSHRPKRDR RTARFMFEAIRAEGYAGSYGRVSAFVRRWHEEQAEAPRRKAFVPLAFEPGEAFQFDWSCEYAFVGGLRRRLEVAHVKLNS SRAFWLVAYPTQSHEMMLFDAHARAFAALGGVPGRGIYDNIKTAVDKVGRGKERAVNARFEAMCSHYLFEPEFCNRAAGW EKGIVEKNVQDRRRQIWHEAALRRWETLEILNEWVAGQCREAWQMRHPQWPELTVEDVLQDERIRLMPNPRPFDGYIEQT LRVSSTSLIHFQRNRYSVPTEYTNQLVSVRCYPAYLSVVANAQEIARHERSFERHMTFYDWRHYVTLVERKPGALRNGAP FITMPQPLQLLQRHLLKHPGGDRVMTQVLAAVREHGLDAVLLAVQAALDSGRPSAEHVLNVLSRLKAPTTSTNLATTKLQ LTEEPAADVSRYETLRANPPEDRHV
Sequences:
>Translated_505_residues MITVGILAKIRRMYFREKVPLREIARRTGLSRNTVRRWLRQTDAVEPKYPKRVSPSVIDDWAAQLTGWLRADSHRPKRDR RTARFMFEAIRAEGYAGSYGRVSAFVRRWHEEQAEAPRRKAFVPLAFEPGEAFQFDWSCEYAFVGGLRRRLEVAHVKLNS SRAFWLVAYPTQSHEMMLFDAHARAFAALGGVPGRGIYDNIKTAVDKVGRGKERAVNARFEAMCSHYLFEPEFCNRAAGW EKGIVEKNVQDRRRQIWHEAALRRWETLEILNEWVAGQCREAWQMRHPQWPELTVEDVLQDERIRLMPNPRPFDGYIEQT LRVSSTSLIHFQRNRYSVPTEYTNQLVSVRCYPAYLSVVANAQEIARHERSFERHMTFYDWRHYVTLVERKPGALRNGAP FITMPQPLQLLQRHLLKHPGGDRVMTQVLAAVREHGLDAVLLAVQAALDSGRPSAEHVLNVLSRLKAPTTSTNLATTKLQ LTEEPAADVSRYETLRANPPEDRHV >Mature_505_residues MITVGILAKIRRMYFREKVPLREIARRTGLSRNTVRRWLRQTDAVEPKYPKRVSPSVIDDWAAQLTGWLRADSHRPKRDR RTARFMFEAIRAEGYAGSYGRVSAFVRRWHEEQAEAPRRKAFVPLAFEPGEAFQFDWSCEYAFVGGLRRRLEVAHVKLNS SRAFWLVAYPTQSHEMMLFDAHARAFAALGGVPGRGIYDNIKTAVDKVGRGKERAVNARFEAMCSHYLFEPEFCNRAAGW EKGIVEKNVQDRRRQIWHEAALRRWETLEILNEWVAGQCREAWQMRHPQWPELTVEDVLQDERIRLMPNPRPFDGYIEQT LRVSSTSLIHFQRNRYSVPTEYTNQLVSVRCYPAYLSVVANAQEIARHERSFERHMTFYDWRHYVTLVERKPGALRNGAP FITMPQPLQLLQRHLLKHPGGDRVMTQVLAAVREHGLDAVLLAVQAALDSGRPSAEHVLNVLSRLKAPTTSTNLATTKLQ LTEEPAADVSRYETLRANPPEDRHV
Specific function: Required for the transposition of the insertion element (Potential) [H]
COG id: COG4584
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 integrase catalytic domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017894 - InterPro: IPR001584 [H]
Pfam domain/function: PF00665 rve [H]
EC number: NA
Molecular weight: Translated: 58473; Mature: 58473
Theoretical pI: Translated: 10.24; Mature: 10.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITVGILAKIRRMYFREKVPLREIARRTGLSRNTVRRWLRQTDAVEPKYPKRVSPSVIDD CEEHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHH WAAQLTGWLRADSHRPKRDRRTARFMFEAIRAEGYAGSYGRVSAFVRRWHEEQAEAPRRK HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHH AFVPLAFEPGEAFQFDWSCEYAFVGGLRRRLEVAHVKLNSSRAFWLVAYPTQSHEMMLFD CEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHEEEECCCCEEEEEEECCCCCCEEEEE AHARAFAALGGVPGRGIYDNIKTAVDKVGRGKERAVNARFEAMCSHYLFEPEFCNRAAGW HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCC EKGIVEKNVQDRRRQIWHEAALRRWETLEILNEWVAGQCREAWQMRHPQWPELTVEDVLQ CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHC DERIRLMPNPRPFDGYIEQTLRVSSTSLIHFQRNRYSVPTEYTNQLVSVRCYPAYLSVVA CCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHCCHHEEEEHHHHHHHHH NAQEIARHERSFERHMTFYDWRHYVTLVERKPGALRNGAPFITMPQPLQLLQRHLLKHPG HHHHHHHHHHHHHHHCHHHHHHHHHHHEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCC GDRVMTQVLAAVREHGLDAVLLAVQAALDSGRPSAEHVLNVLSRLKAPTTSTNLATTKLQ CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEE LTEEPAADVSRYETLRANPPEDRHV ECCCCHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MITVGILAKIRRMYFREKVPLREIARRTGLSRNTVRRWLRQTDAVEPKYPKRVSPSVIDD CEEHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHH WAAQLTGWLRADSHRPKRDRRTARFMFEAIRAEGYAGSYGRVSAFVRRWHEEQAEAPRRK HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHH AFVPLAFEPGEAFQFDWSCEYAFVGGLRRRLEVAHVKLNSSRAFWLVAYPTQSHEMMLFD CEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHEEEECCCCEEEEEEECCCCCCEEEEE AHARAFAALGGVPGRGIYDNIKTAVDKVGRGKERAVNARFEAMCSHYLFEPEFCNRAAGW HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCC EKGIVEKNVQDRRRQIWHEAALRRWETLEILNEWVAGQCREAWQMRHPQWPELTVEDVLQ CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHC DERIRLMPNPRPFDGYIEQTLRVSSTSLIHFQRNRYSVPTEYTNQLVSVRCYPAYLSVVA CCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHCCHHEEEEHHHHHHHHH NAQEIARHERSFERHMTFYDWRHYVTLVERKPGALRNGAPFITMPQPLQLLQRHLLKHPG HHHHHHHHHHHHHHHCHHHHHHHHHHHEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCC GDRVMTQVLAAVREHGLDAVLLAVQAALDSGRPSAEHVLNVLSRLKAPTTSTNLATTKLQ CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEE LTEEPAADVSRYETLRANPPEDRHV ECCCCHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9023192 [H]