| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is solR [H]
Identifier: 238027886
GI number: 238027886
Start: 2552218
End: 2552949
Strand: Reverse
Name: solR [H]
Synonym: bglu_1g23190
Alternate gene names: 238027886
Gene position: 2552949-2552218 (Counterclockwise)
Preceding gene: 238027890
Following gene: 238027885
Centisome position: 65.35
GC content: 62.16
Gene sequence:
>732_bases TTGACGGAAGGTTTCGATCAACTGGCTGAAAAGATCAGGAAGGTGATTCCGTTCGACAGGTGCCTGATCCTGCACGAGGG CCGTGGCGATACGCGGCCGCACGGGCTGATTTATCGCTACGGGACGCTCGTCAATCTCGCGGACGCCCGGCGGGGCGTGA CGCTGTTCGGGTCCACGCTCGACATCGACCGATACCTCGATTGCTTTGCCTTGTCCGACCAGCAGGATCACACGTATCGC TGGCGCGATCTCGATACCGACAGGTCGTCGCTGCATGCGTCGGAGGCCGATGTCGCATCGTACATGCGCGGGCAGGGCAT CGTGGCCTGCATCGGTGCCTCGTCTGGCGACCCCGCCGCGATCCGCACGGTGCTGCAGCTGAAATGCGAGGACGAGTCGC TGCACTCGGCCCTGATCCTGAGTTTCATCGCCATGCATCTGCATGCGGCGCTGACGCAGAAGATCCCGGATCGCAGCCAT GGCGAGGCGCGAATGCCCGCGGCCGAGACGGATGGTGTGGGAAGCGCCGACGGCGAGGGGTTTCAATTCACCAGGAAGGA GTCCGAAGTCGTCAAGTGGGTCGTCGAAGGCAAGACTGCTTGGGAAATCGGGCGAATCCTGTGCATGTCGGAGCGCACGG TCAAGTTTCATCTGACCAACGTATACGAAAAGCTGCGTGTCACCAACCGCGCGCAGGCGGTGGCGAAAGTCAGCCGTCTG GGCCTGATCTAG
Upstream 100 bases:
>100_bases GCTGCTGCGCCTGCCGTTGCTCACATGTCACGCATTTTTGTTAGGGGGTCGTCAAGTGACTTTTGCTCGCGTTATCGGCG ATATTCTTCGCCCCAACGGC
Downstream 100 bases:
>100_bases GAGAGTCGAGATATGTCGTTCAAGGAAAAGATTGGAGCGTTCGTGGCGCGCCATGGGTTGACGTACAAGGCCTATGTTCT GTCGATCCTGTTCATGCCGC
Product: LuxR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 243; Mature: 242
Protein sequence:
>243_residues MTEGFDQLAEKIRKVIPFDRCLILHEGRGDTRPHGLIYRYGTLVNLADARRGVTLFGSTLDIDRYLDCFALSDQQDHTYR WRDLDTDRSSLHASEADVASYMRGQGIVACIGASSGDPAAIRTVLQLKCEDESLHSALILSFIAMHLHAALTQKIPDRSH GEARMPAAETDGVGSADGEGFQFTRKESEVVKWVVEGKTAWEIGRILCMSERTVKFHLTNVYEKLRVTNRAQAVAKVSRL GLI
Sequences:
>Translated_243_residues MTEGFDQLAEKIRKVIPFDRCLILHEGRGDTRPHGLIYRYGTLVNLADARRGVTLFGSTLDIDRYLDCFALSDQQDHTYR WRDLDTDRSSLHASEADVASYMRGQGIVACIGASSGDPAAIRTVLQLKCEDESLHSALILSFIAMHLHAALTQKIPDRSH GEARMPAAETDGVGSADGEGFQFTRKESEVVKWVVEGKTAWEIGRILCMSERTVKFHLTNVYEKLRVTNRAQAVAKVSRL GLI >Mature_242_residues TEGFDQLAEKIRKVIPFDRCLILHEGRGDTRPHGLIYRYGTLVNLADARRGVTLFGSTLDIDRYLDCFALSDQQDHTYRW RDLDTDRSSLHASEADVASYMRGQGIVACIGASSGDPAAIRTVLQLKCEDESLHSALILSFIAMHLHAALTQKIPDRSHG EARMPAAETDGVGSADGEGFQFTRKESEVVKWVVEGKTAWEIGRILCMSERTVKFHLTNVYEKLRVTNRAQAVAKVSRLG LI
Specific function: Activates Cell Division By Specifically Increasing Transcription From One Of The Two Promoters That Lie Immediately Upstream Of The Ftsqaz Gene Cluster. [C]
COG id: COG2771
COG function: function code K; DNA-binding HTH domain-containing proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016032 - InterPro: IPR005143 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]
EC number: NA
Molecular weight: Translated: 27077; Mature: 26946
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEGFDQLAEKIRKVIPFDRCLILHEGRGDTRPHGLIYRYGTLVNLADARRGVTLFGSTL CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCEEEHHHCCCCEEEECCEE DIDRYLDCFALSDQQDHTYRWRDLDTDRSSLHASEADVASYMRGQGIVACIGASSGDPAA CHHHHHHHHCCCCCCCCCEEECCCCCCHHHHCCCHHHHHHHHCCCCEEEEEECCCCCHHH IRTVLQLKCEDESLHSALILSFIAMHLHAALTQKIPDRSHGEARMPAAETDGVGSADGEG HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC FQFTRKESEVVKWVVEGKTAWEIGRILCMSERTVKFHLTNVYEKLRVTNRAQAVAKVSRL CEEECCHHHHHHHHHCCCCHHHHHHEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH GLI CCC >Mature Secondary Structure TEGFDQLAEKIRKVIPFDRCLILHEGRGDTRPHGLIYRYGTLVNLADARRGVTLFGSTL CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCEEEHHHCCCCEEEECCEE DIDRYLDCFALSDQQDHTYRWRDLDTDRSSLHASEADVASYMRGQGIVACIGASSGDPAA CHHHHHHHHCCCCCCCCCEEECCCCCCHHHHCCCHHHHHHHHCCCCEEEEEECCCCCHHH IRTVLQLKCEDESLHSALILSFIAMHLHAALTQKIPDRSHGEARMPAAETDGVGSADGEG HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC FQFTRKESEVVKWVVEGKTAWEIGRILCMSERTVKFHLTNVYEKLRVTNRAQAVAKVSRL CEEECCHHHHHHHHHCCCCHHHHHHEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH GLI CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]