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The map label for this gene is xylF [H]

Identifier: 238027791

GI number: 238027791

Start: 2413427

End: 2414455

Strand: Reverse

Name: xylF [H]

Synonym: bglu_1g22150

Alternate gene names: 238027791

Gene position: 2414455-2413427 (Counterclockwise)

Preceding gene: 238027795

Following gene: 238027790

Centisome position: 61.81

GC content: 68.03

Gene sequence:

>1029_bases
ATGCCATCGAATCGCCGTCGTTCCGTCCTGAAATCCCTGGTCGCCACCGCCGCGCTCGCGAGCCTCTCGCTGGCGGCGCC
GCTCGCCCATGCCAGCAAGGACCGCCCCGAGATCGGCTTTTGCATCGACGACCTGCGCGTCGAGCGCTGGTCGCGCGATC
GCGACTACTTCGTCGCCGCGGCCGAAAAGCTCGGCGCGAAGGTGTCGGTGCAGTCGGCCGACGCCAGCGAGGAGCGCCAG
ATCTCGCAGATCGAGAATCTGATCTCGCGCGGCGTGGACGTGATCGTGATCGTGCCGTTCAATTCGAAGGCGCTCACCAA
CGTGGTGGCCGAGGCCAAGAAAGCCGGCATCAAGGTGGTTTCGTACGATCGGCTGATCCTCGACGCCGACGTGGACGCCT
ACATCTCGTTCGACAACGAGAAGGTGGGCGAGATGCAGGCGCAGGGCGTGCTCAACGCGCGGCCCAAGGGGCGCTACTTC
CTGCTCGGCGGCGCGCCCACCGACAACAACGCGAAGATGCTGCGCGAAGGCCAGATGAAGGTGCTGCAGCCGGCCATCGA
CCGCGGCGACGTCAAGGTGGTCGGCTCGCAGTGGGTGCCCGAATGGAGCGCCTCCACCGCGCTCGGCATCATGGAGAACG
CGCTGACCGCCAACGGCAACCGGATCGACGCGGTGGTCGCCTCCAACGACGGCACCGCGGGCGGCGCGATCCAGGCGCTC
GCCGCGCAGCACCTGGCCGGCAAGGTGCCGGTGTCGGGGCAGGACGCCGACCTCGCCGCCGTCAAGCGGCTGGTGGCCGG
CACCCAGACGATGACGGTCTACAAGCCGCTCAAGCTGATCGCGGGCGAGGCGGCCAAGCTCGCCGTGACGCTCGCCAAGG
GCGGCAAGCCGGCCTACAACGCGCAGTACGACAACGGCCGGAAGAAGGTGGACACGCTGCTGCTGCAGCCGACCCTGCTC
ACCAAGGACAACGTCGACGTGGTGGTGAAGGACGGCTTCTACACCCAGGCGCAGATCGGCGCGCACTGA

Upstream 100 bases:

>100_bases
GCCGCGCCCGGACCGCGCGCCGCCGGCCGGCGCGCCGGGCGCCGTAGGCCGGCGGCCGGCCGCTCACACACAAGAACCAG
TACGAAATGGAGACAGAGAC

Downstream 100 bases:

>100_bases
GGCGGCGGCCCGCCCGCGCCCGGGCGGCGCGGGCACGGGCCACCCGAGACCCGGATATGAACGAGGACGACGCATGTCGG
ACACCCGCATGACGCAACCC

Product: ABC xylose transporter, periplasmic ligand binding protein

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MPSNRRRSVLKSLVATAALASLSLAAPLAHASKDRPEIGFCIDDLRVERWSRDRDYFVAAAEKLGAKVSVQSADASEERQ
ISQIENLISRGVDVIVIVPFNSKALTNVVAEAKKAGIKVVSYDRLILDADVDAYISFDNEKVGEMQAQGVLNARPKGRYF
LLGGAPTDNNAKMLREGQMKVLQPAIDRGDVKVVGSQWVPEWSASTALGIMENALTANGNRIDAVVASNDGTAGGAIQAL
AAQHLAGKVPVSGQDADLAAVKRLVAGTQTMTVYKPLKLIAGEAAKLAVTLAKGGKPAYNAQYDNGRKKVDTLLLQPTLL
TKDNVDVVVKDGFYTQAQIGAH

Sequences:

>Translated_342_residues
MPSNRRRSVLKSLVATAALASLSLAAPLAHASKDRPEIGFCIDDLRVERWSRDRDYFVAAAEKLGAKVSVQSADASEERQ
ISQIENLISRGVDVIVIVPFNSKALTNVVAEAKKAGIKVVSYDRLILDADVDAYISFDNEKVGEMQAQGVLNARPKGRYF
LLGGAPTDNNAKMLREGQMKVLQPAIDRGDVKVVGSQWVPEWSASTALGIMENALTANGNRIDAVVASNDGTAGGAIQAL
AAQHLAGKVPVSGQDADLAAVKRLVAGTQTMTVYKPLKLIAGEAAKLAVTLAKGGKPAYNAQYDNGRKKVDTLLLQPTLL
TKDNVDVVVKDGFYTQAQIGAH
>Mature_341_residues
PSNRRRSVLKSLVATAALASLSLAAPLAHASKDRPEIGFCIDDLRVERWSRDRDYFVAAAEKLGAKVSVQSADASEERQI
SQIENLISRGVDVIVIVPFNSKALTNVVAEAKKAGIKVVSYDRLILDADVDAYISFDNEKVGEMQAQGVLNARPKGRYFL
LGGAPTDNNAKMLREGQMKVLQPAIDRGDVKVVGSQWVPEWSASTALGIMENALTANGNRIDAVVASNDGTAGGAIQALA
AQHLAGKVPVSGQDADLAAVKRLVAGTQTMTVYKPLKLIAGEAAKLAVTLAKGGKPAYNAQYDNGRKKVDTLLLQPTLLT
KDNVDVVVKDGFYTQAQIGAH

Specific function: Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose [H]

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=312, Percent_Identity=61.2179487179487, Blast_Score=395, Evalue=1e-111,
Organism=Escherichia coli, GI1790526, Length=247, Percent_Identity=29.5546558704453, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1790192, Length=232, Percent_Identity=26.7241379310345, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR013456 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36418; Mature: 36287

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSNRRRSVLKSLVATAALASLSLAAPLAHASKDRPEIGFCIDDLRVERWSRDRDYFVAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCCHHEEHH
AEKLGAKVSVQSADASEERQISQIENLISRGVDVIVIVPFNSKALTNVVAEAKKAGIKVV
HHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCEEEE
SYDRLILDADVDAYISFDNEKVGEMQAQGVLNARPKGRYFLLGGAPTDNNAKMLREGQMK
EECEEEEECCCCEEEEECCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCHH
VLQPAIDRGDVKVVGSQWVPEWSASTALGIMENALTANGNRIDAVVASNDGTAGGAIQAL
HHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
AAQHLAGKVPVSGQDADLAAVKRLVAGTQTMTVYKPLKLIAGEAAKLAVTLAKGGKPAYN
HHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHHHHCCCCEEEEEEEECCCCCCCC
AQYDNGRKKVDTLLLQPTLLTKDNVDVVVKDGFYTQAQIGAH
CCCCCCHHHHHHHEECCEEECCCCCEEEEECCCEEEEECCCC
>Mature Secondary Structure 
PSNRRRSVLKSLVATAALASLSLAAPLAHASKDRPEIGFCIDDLRVERWSRDRDYFVAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCCHHEEHH
AEKLGAKVSVQSADASEERQISQIENLISRGVDVIVIVPFNSKALTNVVAEAKKAGIKVV
HHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCEEEE
SYDRLILDADVDAYISFDNEKVGEMQAQGVLNARPKGRYFLLGGAPTDNNAKMLREGQMK
EECEEEEECCCCEEEEECCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCHH
VLQPAIDRGDVKVVGSQWVPEWSASTALGIMENALTANGNRIDAVVASNDGTAGGAIQAL
HHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
AAQHLAGKVPVSGQDADLAAVKRLVAGTQTMTVYKPLKLIAGEAAKLAVTLAKGGKPAYN
HHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHHHHCCCCEEEEEEEECCCCCCCC
AQYDNGRKKVDTLLLQPTLLTKDNVDVVVKDGFYTQAQIGAH
CCCCCCHHHHHHHEECCEEECCCCCEEEEECCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 8581399; 9298646 [H]