| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238027642
Identifier: 238027642
GI number: 238027642
Start: 2253804
End: 2254235
Strand: Direct
Name: 238027642
Synonym: bglu_1g20630
Alternate gene names: NA
Gene position: 2253804-2254235 (Clockwise)
Preceding gene: 238027630
Following gene: 238027645
Centisome position: 57.69
GC content: 58.8
Gene sequence:
>432_bases ATGGCTACCGTAAAGAAACGACCTCTCACATCCGAAGAAATCGAAGAGTGCCGCCGCTTGGCCCAGGCTTGGGAGCGGCA CAAGCAAGACAATCCGGGAGCGTCACAGAACTGGTTGGGCCAAGTGACAGGACTTGGTGGTCAGAGCCTGATCTCGCAGT ATTTCCGCGGCGTCATCCCGCTCAACGTCCGGGCTCTCCTGACGATCTGTAAGCACATCAACGCCGATCCTCAGGCAATC AGCCCGCGGCTCATGAGTCAGATCATGCCGGCCGGTCTGAAGGAAATCCTGGCCGACGTCCGTCCTGCAGCACGGGATGC GATTGAAGCTATTCTTCGTGCAGAACAGGCGGGCGAATCGGACGAAGTGTTTCGGCTGGTGCTTCGGCTGTTTCCGCCTC GCGATGAGGCAGGCGAACTCGAGCGATCATAG
Upstream 100 bases:
>100_bases TTGTTCATGGCCGAATATTAGAACTTCTTCTTTTCATGGTCAAGAGAAGTTCTAATGCTGTCGGCCAGCGGATATTAGTA GCCCTTTTTATGATTGCCGC
Downstream 100 bases:
>100_bases CCGCGATCGCCACCTGTTTCTCCTCATCGGTAAGGGGTTCCAGCGAGGAATCCTTCGCCTTGAGGCGCCGAGTAACCACG TATCCCGGTCCTGTAGAGCG
Product: Cro/CI family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 143; Mature: 142
Protein sequence:
>143_residues MATVKKRPLTSEEIEECRRLAQAWERHKQDNPGASQNWLGQVTGLGGQSLISQYFRGVIPLNVRALLTICKHINADPQAI SPRLMSQIMPAGLKEILADVRPAARDAIEAILRAEQAGESDEVFRLVLRLFPPRDEAGELERS
Sequences:
>Translated_143_residues MATVKKRPLTSEEIEECRRLAQAWERHKQDNPGASQNWLGQVTGLGGQSLISQYFRGVIPLNVRALLTICKHINADPQAI SPRLMSQIMPAGLKEILADVRPAARDAIEAILRAEQAGESDEVFRLVLRLFPPRDEAGELERS >Mature_142_residues ATVKKRPLTSEEIEECRRLAQAWERHKQDNPGASQNWLGQVTGLGGQSLISQYFRGVIPLNVRALLTICKHINADPQAIS PRLMSQIMPAGLKEILADVRPAARDAIEAILRAEQAGESDEVFRLVLRLFPPRDEAGELERS
Specific function: Unknown
COG id: COG1974
COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15938; Mature: 15806
Theoretical pI: Translated: 7.42; Mature: 7.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATVKKRPLTSEEIEECRRLAQAWERHKQDNPGASQNWLGQVTGLGGQSLISQYFRGVIP CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCC LNVRALLTICKHINADPQAISPRLMSQIMPAGLKEILADVRPAARDAIEAILRAEQAGES HHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCH DEVFRLVLRLFPPRDEAGELERS HHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure ATVKKRPLTSEEIEECRRLAQAWERHKQDNPGASQNWLGQVTGLGGQSLISQYFRGVIP CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCC LNVRALLTICKHINADPQAISPRLMSQIMPAGLKEILADVRPAARDAIEAILRAEQAGES HHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCH DEVFRLVLRLFPPRDEAGELERS HHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA