Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

Click here to switch to the map view.

The map label for this gene is iscS [C]

Identifier: 238027444

GI number: 238027444

Start: 2021610

End: 2022713

Strand: Direct

Name: iscS [C]

Synonym: bglu_1g18470

Alternate gene names: 238027444

Gene position: 2021610-2022713 (Clockwise)

Preceding gene: 238027443

Following gene: 238027446

Centisome position: 51.75

GC content: 76.54

Gene sequence:

>1104_bases
ATGAACCGCTTCGATCCGCGCCGCCTGCTCGACCTGCCCAGGTATCCGGAGCATGGCTATGCGCGGCTCGCCGATCGCCT
CCGCCATTTGCTCGCGACCTCGGCCGACATCCTGTTCGTGCAGGCCGAGGCCGTGTTCGCGCTGGAGGCCGTCGCCACCA
GCCTGGCGCGCCCGGGCCTGACCGCCGTGAACGTCGTCACGAGCCGCTACGGGCGCTGGTTCGGCGCCTGGCTGCGGCGC
GGCGGGGTGAGCGTCCATGACGTGACGGCCGCGCCCGGCCAGGCGATTGCGCTCGGCGCCGTCGAGGCCCGCGCCGACGA
GCTGGCGCGCGTCGACATCGTGGCTGCGGTGCATGCCGAATCGTCGAGCGGCGCGCTCAACCCGATCGCCGGCCTTGCCG
CGCTGGCCCGCGCGCGCGACGCGCTGTTCGCCGTCAACGCGGTGGCCTCGGTCGGCGGCCACGCGCTCGAACTCGACGCG
CTCGGCATCGACGTGGCCGTGATCGGGCCGCAGAAGGCCTTGGCGGGGCCGGCCGGCGTGTCGGCCGTGGCGGTCGGCGC
GCGCGCCTGGGCGCAGATCGAGGCGGCGCCGGATTTCGCGCCGTCCGCGCTGTCGCTGGCCGCACTGCGCCGCGGCTGGC
TGCAGCGCGATCGCGGCCTGCTGCCGGGTTCGCCGTCCGCGCTCGAGTTCTGGGCGCTGGAGGCCGCGCTCGACCGCATC
GAGGCCGAGGGTATCGCGCGGATGGTGGCGCGCCACGCGCAGGCCGCGCGCGCGAGCCGCGCCGCGCTGCGCGCGCTCGG
CGTGCCGCCGTGGATCGCGCACGACGACGCCGCCTCGGCGCTCGTCACCGCCGCGCCGGTGCCGCCCGGCGTGGACCCGC
TGGCGCTGATCTCGCACGCGCGCCGGCACGGCGTGGAGCTGGCGCCCGGGGCCGGCGAGATCGCCGGCCGGATCGTGCGG
CTCGACCATACCGGCCTGCGCGCCAGCGCCGACGCGGTGCATGCGAACCTGGTCGCCTATGGCGGCGCGCTCGAACAGCT
GCGCTATCCGGTCGATCTCGACGCGGCCGGCCAGGCGATCGCCGACGCCTACGCGGGCGACTGA

Upstream 100 bases:

>100_bases
TGCCGCCGAGGCGGGCCGCCGCGCGCCGGCTCGAAGCGCCCGGCCTCGCGGCGCGCCGGGCGAGCGCTCAGGCCGCCCGC
CCCTCTGCCACCCGTCGCCC

Downstream 100 bases:

>100_bases
CGCAGCCGGCCAGGCTCGCGGCGGCCGCCGCTCAGCGCACCAGCCCGCGCGCCGCCAGGTTGCGGAACAGCGCGCGCGTG
CCGAACTGCCAGGGCGCCAC

Product: putative aspartate aminotransferase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MNRFDPRRLLDLPRYPEHGYARLADRLRHLLATSADILFVQAEAVFALEAVATSLARPGLTAVNVVTSRYGRWFGAWLRR
GGVSVHDVTAAPGQAIALGAVEARADELARVDIVAAVHAESSSGALNPIAGLAALARARDALFAVNAVASVGGHALELDA
LGIDVAVIGPQKALAGPAGVSAVAVGARAWAQIEAAPDFAPSALSLAALRRGWLQRDRGLLPGSPSALEFWALEAALDRI
EAEGIARMVARHAQAARASRAALRALGVPPWIAHDDAASALVTAAPVPPGVDPLALISHARRHGVELAPGAGEIAGRIVR
LDHTGLRASADAVHANLVAYGGALEQLRYPVDLDAAGQAIADAYAGD

Sequences:

>Translated_367_residues
MNRFDPRRLLDLPRYPEHGYARLADRLRHLLATSADILFVQAEAVFALEAVATSLARPGLTAVNVVTSRYGRWFGAWLRR
GGVSVHDVTAAPGQAIALGAVEARADELARVDIVAAVHAESSSGALNPIAGLAALARARDALFAVNAVASVGGHALELDA
LGIDVAVIGPQKALAGPAGVSAVAVGARAWAQIEAAPDFAPSALSLAALRRGWLQRDRGLLPGSPSALEFWALEAALDRI
EAEGIARMVARHAQAARASRAALRALGVPPWIAHDDAASALVTAAPVPPGVDPLALISHARRHGVELAPGAGEIAGRIVR
LDHTGLRASADAVHANLVAYGGALEQLRYPVDLDAAGQAIADAYAGD
>Mature_367_residues
MNRFDPRRLLDLPRYPEHGYARLADRLRHLLATSADILFVQAEAVFALEAVATSLARPGLTAVNVVTSRYGRWFGAWLRR
GGVSVHDVTAAPGQAIALGAVEARADELARVDIVAAVHAESSSGALNPIAGLAALARARDALFAVNAVASVGGHALELDA
LGIDVAVIGPQKALAGPAGVSAVAVGARAWAQIEAAPDFAPSALSLAALRRGWLQRDRGLLPGSPSALEFWALEAALDRI
EAEGIARMVARHAQAARASRAALRALGVPPWIAHDDAASALVTAAPVPPGVDPLALISHARRHGVELAPGAGEIAGRIVR
LDHTGLRASADAVHANLVAYGGALEQLRYPVDLDAAGQAIADAYAGD

Specific function: Fe-S cluster biosynthesis [C]

COG id: COG0075

COG function: function code E; Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI4557289, Length=299, Percent_Identity=27.0903010033445, Blast_Score=92, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17536281, Length=316, Percent_Identity=27.2151898734177, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI17530823, Length=312, Percent_Identity=26.2820512820513, Blast_Score=99, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: 2.6.1.-

Molecular weight: Translated: 37926; Mature: 37926

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRFDPRRLLDLPRYPEHGYARLADRLRHLLATSADILFVQAEAVFALEAVATSLARPGL
CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCC
TAVNVVTSRYGRWFGAWLRRGGVSVHDVTAAPGQAIALGAVEARADELARVDIVAAVHAE
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHEEEEEEECC
SSSGALNPIAGLAALARARDALFAVNAVASVGGHALELDALGIDVAVIGPQKALAGPAGV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCHHHHCCCCCH
SAVAVGARAWAQIEAAPDFAPSALSLAALRRGWLQRDRGLLPGSPSALEFWALEAALDRI
HHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EAEGIARMVARHAQAARASRAALRALGVPPWIAHDDAASALVTAAPVPPGVDPLALISHA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEECCCCCCCCHHHHHHHH
RRHGVELAPGAGEIAGRIVRLDHTGLRASADAVHANLVAYGGALEQLRYPVDLDAAGQAI
HHCCCEECCCCHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHH
ADAYAGD
HHHHCCC
>Mature Secondary Structure
MNRFDPRRLLDLPRYPEHGYARLADRLRHLLATSADILFVQAEAVFALEAVATSLARPGL
CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCC
TAVNVVTSRYGRWFGAWLRRGGVSVHDVTAAPGQAIALGAVEARADELARVDIVAAVHAE
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHEEEEEEECC
SSSGALNPIAGLAALARARDALFAVNAVASVGGHALELDALGIDVAVIGPQKALAGPAGV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCHHHHCCCCCH
SAVAVGARAWAQIEAAPDFAPSALSLAALRRGWLQRDRGLLPGSPSALEFWALEAALDRI
HHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EAEGIARMVARHAQAARASRAALRALGVPPWIAHDDAASALVTAAPVPPGVDPLALISHA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEECCCCCCCCHHHHHHHH
RRHGVELAPGAGEIAGRIVRLDHTGLRASADAVHANLVAYGGALEQLRYPVDLDAAGQAI
HHCCCEECCCCHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHH
ADAYAGD
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]